RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TWISTNBQ3B726 338 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-208ENST00000551691 RABL6Q3YEC7 729 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-208ENST00000551691 GALNTL6Q49A17 601 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 FAM69AQ5T7M9 428 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 DEPDC1Q5TB30 811 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 FAM205BPQ63HN1 556 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 ANKRD40Q6AI12 368 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 SLC22A25Q6T423 547 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 BBS12Q6ZW61 710 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 ENOSF1Q7L5Y1 443 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 ANKS1BQ7Z6G8 1248 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 CLNKQ7Z7G1 428 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 C12orf76Q8N812 135 aaPredicted RBP4.04□□□□□ -1.76
LIMA1-208ENST00000551691 AFAP1L1Q8TED9 768 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 ATP8B4Q8TF62 1192 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 MARS2Q96GW9 593 aaKnown RBP4.04□□□□□ -1.76
LIMA1-208ENST00000551691 PLEKHG4BQ96PX9 1271 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 CENPOQ9BU64 300 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 TWSG1Q9GZX9 223 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 ENKD1Q9H0I2 346 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 POMKQ9H5K3 350 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 SYNCQ9H7C4 482 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 TLE6Q9H808 572 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 HSF4Q9ULV5 492 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 PA2G4Q9UQ80 394 aaKnown RBP4.04□□□□□ -1.76
LIMA1-208ENST00000551691 CYP46A1Q9Y6A2 500 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 KALRNO60229 2985 aa4.04□□□□□ -1.76
LIMA1-208ENST00000551691 ASXL3Q9C0F0 2248 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3DA0A087WVF3 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3IA0A087WXS9 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3EA0A087X179 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3KA0A087X1G2 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 FAM170AA1A519 330 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 VWA3AA6NCI4 1184 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3BA6NDS4 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3FA6NER0 549 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 DRGXA6NNA5 263 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3LB9A6J9 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 C5orf67F2Z3F1 127 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 DCLK1O15075 740 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 WDR46O15213 610 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 USO1O60763 962 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 KINO60870 393 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TMEM63AO94886 807 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 CER1O95813 267 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 GPANK1O95872 356 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 MMP1P03956 469 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 RB1P06400 928 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3HP0C7X1 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 CYP2D6P10635 497 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TNNT1P13805 278 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 AKR1B1P15121 316 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 PPIFP30405 207 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 RPS19P39019 145 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 PCP4P48539 62 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 PDE6CP51160 858 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ZNF134P52741 427 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 RARSP54136 660 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 SHC2P98077 582 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBL3Q12788 808 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ERV3-1Q14264 604 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 GRM7Q14831 915 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 WTAPQ15007 396 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 RUNDC3AQ59EK9 446 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 SLC9C2Q5TAH2 1124 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3GQ6DHY5 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3CQ6IPX1 549 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ANO7Q6IWH7 933 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TSSK4Q6SA08 328 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 C16orf54Q6UWD8 224 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TRABD2AQ86V40 505 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 RPAP2Q8IXW5 612 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 DIS3L2Q8IYB7 885 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 GSPT2Q8IYD1 628 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ELOA2Q8IYF1 753 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TBC1D3Q8IZP1 549 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 FAM71DQ8N9W8 422 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 MIGA1Q8NAN2 632 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 OR6J1Q8NGC5 347 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 IL17DQ8TAD2 202 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 OSCP1Q8WVF1 389 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 SNX19Q92543 992 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 DYNLL2Q96FJ2 89 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 APOPT1Q96IL0 206 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 VPS50Q96JG6 964 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 FAR2Q96K12 515 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ZBTB45Q96K62 511 aaPredicted RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 PIGSQ96S52 555 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 RTP3Q9BQQ7 232 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 SEZ6LQ9BYH1 1024 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 AGXT2Q9BYV1 514 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 IFIH1Q9BYX4 1025 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 WDR11Q9BZH6 1224 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TRIM5Q9C035 493 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 CXorf36Q9H7Y0 433 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 MSL2Q9HCI7 577 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ANKEF1Q9NU02 776 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 MRPS18AQ9NVS2 196 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 ETAA1Q9NY74 926 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 NKIRAS2Q9NYR9 191 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms