RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 HEMGNQ9BXL5 484 aa5.18□□□□□ -1.58
LIMA1-205ENST00000550592 PNRC2Q9NPJ4 139 aaKnown RBP5.18□□□□□ -1.58
LIMA1-205ENST00000550592 ADARB2Q9NS39 739 aaKnown RBP5.18□□□□□ -1.58
LIMA1-205ENST00000550592 DIAPH3Q9NSV4 1193 aa5.18□□□□□ -1.58
LIMA1-205ENST00000550592 ABCA6Q8N139 1617 aa5.18□□□□□ -1.58
LIMA1-205ENST00000550592 MSH6P52701 1360 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 C17orf102A2RUQ5 167 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CBY3A6NI87 242 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 TLX3O43711 291 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 TLR2O60603 784 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CNOT3O75175 753 aaKnown RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 PTP4A3O75365 173 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 TOP3BO95985 862 aaKnown RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 HEXAP06865 529 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 UNGP13051 313 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 EPHB2P29323 1055 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CTCFP49711 727 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 PRELPP51888 382 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 EFNA5P52803 228 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CLNS1AP54105 237 aaKnown RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 ID2Q02363 134 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 PRKG2Q13237 762 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 MAMLD1Q13495 774 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 TAF11Q15544 211 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 GSTA3Q16772 222 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 ATG9BQ674R7 924 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 ITPRIPL1Q6GPH6 555 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 FAM83HQ6ZRV2 1179 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 BRINP3Q76B58 766 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 FASTKD5Q7L8L6 764 aaKnown RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 TMC8Q8IU68 726 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CNTROBQ8N137 903 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 SLC44A5Q8NCS7 719 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CMASQ8NFW8 434 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 EME1Q96AY2 570 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 ZG16BQ96DA0 208 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 PIP5K1AQ99755 562 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 ITPAQ9BY32 194 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 PRSS22Q9GZN4 317 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 THSD1Q9NS62 852 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 CDH22Q9UJ99 828 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 SLC4A4Q9Y6R1 1079 aa5.17□□□□□ -1.58
LIMA1-205ENST00000550592 XIRP1Q702N8 1843 aaKnown RBP5.17□□□□□ -1.58
LIMA1-205ENST00000550592 UGGT1Q9NYU2 1555 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 COL16A1Q07092 1604 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 NUP153P49790 1475 aaKnown RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 A0A0G2JK05 382 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 FSD2A1L4K1 749 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 DDTLA6NHG4 134 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 E5RJQ4 531 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 EBAG9O00559 213 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 DOK2O60496 412 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 CCNDBP1O95273 360 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 CELA2AP08217 269 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 SPARCP09486 303 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ACADMP11310 421 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 SLC2A4P14672 509 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ZNF8P17098 575 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 PTPN2P17706 415 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 MAPK4P31152 587 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 HMGA2P52926 109 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ARF3P61204 181 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ARF1P84077 181 aaKnown RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ZNF91Q05481 1191 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 PDE1CQ14123 709 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 SMTNL2Q2TAL5 461 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ASPHD1Q5U4P2 390 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 FAM205BPQ63HN1 556 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 TXNDC8Q6A555 127 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 CDC73Q6P1J9 531 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 SLC46A3Q7Z3Q1 461 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 YTHDF3Q7Z739 585 aaKnown RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 SERPINA11Q86U17 422 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 CCDC105Q8IYK2 499 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 DPP10Q8N608 796 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 MSI2Q96DH6 328 aaKnown RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 ZNF419Q96HQ0 510 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 GLIS2Q9BZE0 524 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 MUC13Q9H3R2 512 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 AAMDCQ9H7C9 122 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 PRKRIP1Q9H875 184 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-205ENST00000550592 TMEM184CQ9NVA4 438 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 NCKIPSDQ9NZQ3 722 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 SEL1LQ9UBV2 794 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 A4GNTQ9UNA3 340 aa5.16□□□□□ -1.58
LIMA1-205ENST00000550592 MIA2Q96PC5 1412 aa5.15□□□□□ -1.58
LIMA1-205ENST00000550592 SHPRHQ149N8 1683 aa5.15□□□□□ -1.58
LIMA1-205ENST00000550592 NLRP1Q9C000 1473 aa5.15□□□□□ -1.58
LIMA1-205ENST00000550592 HSPB6O14558 160 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 TIPRLO75663 272 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 HOXD9P28356 352 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-205ENST00000550592 TTKP33981 857 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 RYKP34925 604 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 PTGER1P34995 402 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 ARL3P36405 182 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 ARHGAP25P42331 645 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 GABRB2P47870 512 aa5.15□□□□□ -1.59
LIMA1-205ENST00000550592 RARSP54136 660 aaKnown RBP5.15□□□□□ -1.59
LIMA1-205ENST00000550592 DRG2P55039 364 aaKnown RBP5.15□□□□□ -1.59
LIMA1-205ENST00000550592 TMEM115Q12893 351 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms