RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PPP1R36Q96LQ0 422 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 MED10Q9BTT4 135 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 COLEC11Q9BWP8 271 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 ANKRD60Q9BZ19 345 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 KATNBL1Q9H079 304 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 DDIT4Q9NX09 232 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 CD300AQ9UGN4 299 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 RSL24D1Q9UHA3 163 aaKnown RBP13.86□□□□□ -0.19
VPS33A-208ENST00000543633 PTCH2Q9Y6C5 1203 aa13.86□□□□□ -0.19
VPS33A-208ENST00000543633 SMIM35A0A1B0GVV1 85 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 BBIP1A8MTZ0 92 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 KCNU1A8MYU2 1149 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 H3BNH8 94 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 STX16-NPEPL1H3BU86 382 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 I6L893 689 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 NRP1O14786 923 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 BEST1O76090 585 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SRP72O76094 671 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 STAMBPO95630 424 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 JCHAINP01591 159 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 MMP3P08254 477 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TPH1P17752 444 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ACADVLP49748 655 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 NDUFV1P49821 464 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 USP46P62068 366 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 DCTN2Q13561 401 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 FASTKQ14296 549 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TBC1D25Q3MII6 688 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 GK5Q6ZS86 529 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SLC22A9Q8IVM8 553 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 NUP93Q8N1F7 819 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SCML4Q8N228 414 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ADAM32Q8TC27 787 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SPPL2BQ8TCT7 592 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ATP6V1E2Q96A05 226 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ROPN1LQ96C74 230 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 APOL2Q9BQE5 337 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 RHOBTB2Q9BYZ6 727 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 OSBPL2Q9H1P3 480 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ANLNQ9NQW6 1124 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ENTPD7Q9NQZ7 604 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 C8orf4Q9NR00 106 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 GTSE1Q9NYZ3 720 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 PCDHGB4Q9UN71 923 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 MYRFQ9Y2G1 1151 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 RNF11Q9Y3C5 154 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 PCDHGB5Q9Y5G0 923 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TRIM64CA6NLI5 447 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 E7ENX8 843 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ZNF701M0R085 212 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 PSMD12O00232 456 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 CLDN5O00501 218 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 UBDO15205 165 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 BMP10O95393 424 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SNRPB2P08579 225 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 HSPA8P11142 646 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SLC5A2P31639 672 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 CLCN5P51795 746 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SLC12A2P55011 1212 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 SLC14A2Q15849 920 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 FAM83EQ2M2I3 478 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 KCTD21Q4G0X4 260 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 AGAP9Q5VTM2 703 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 DHRS4L2Q6PKH6 230 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 CEP97Q8IW35 865 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TMEM86AQ8N2M4 240 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 LZTR1Q8N653 840 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 RNF148Q8N7C7 305 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 CALML6Q8TD86 181 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 DIS3LQ8TF46 1054 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 LPGAT1Q92604 370 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TSPAN17Q96FV3 270 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ELMO2Q96JJ3 720 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 MS4A4AQ96JQ5 239 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 IL12RB2Q99665 862 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 CCT7Q99832 543 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TRIM62Q9BVG3 475 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 UPF3AQ9H1J1 476 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TREX1Q9NSU2 369 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 ARMC1Q9NVT9 282 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 TMEM181Q9P2C4 612 aa13.85□□□□□ -0.19
VPS33A-208ENST00000543633 PTBP2Q9UKA9 531 aaKnown RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.85□□□□□ -0.19
VPS33A-208ENST00000543633 C7orf72A4D263 438 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 YJEFN3A6XGL0 299 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 LRIG2O94898 1065 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 F7P08709 466 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-208ENST00000543633 RBP1P09455 135 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 CDK4P11802 303 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 BMP2P12643 396 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 ARNTP27540 789 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 AVPR1AP37288 418 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 SLC1A2P43004 574 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 RANBP1P43487 201 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 SOX4Q06945 474 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-208ENST00000543633 GK3PQ14409 553 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 SPATS1Q496A3 300 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 CST9Q5W186 159 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 PRMT9Q6P2P2 845 aa13.84□□□□□ -0.19
VPS33A-208ENST00000543633 AMIGO2Q86SJ2 522 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms