RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PXNP49023 591 aaPredicted RBP17.3■□□□□ 0.36
LIG1-204ENST00000542460 SKOR1P84550 965 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 SLC14A2Q15849 920 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 PARP6Q2NL67 630 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 TTC31Q49AM3 519 aaPredicted RBP17.3■□□□□ 0.36
LIG1-204ENST00000542460 TSSK4Q6SA08 328 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 ZNF572Q7Z3I7 529 aaPredicted RBP17.3■□□□□ 0.36
LIG1-204ENST00000542460 PRPF39Q86UA1 669 aaKnown RBP17.3■□□□□ 0.36
LIG1-204ENST00000542460 KLHL32Q96NJ5 620 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 RUNDC3BQ96NL0 473 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 PPP1R2P1Q96PQ5 205 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 RBM15Q96T37 977 aaKnown RBP eCLIP17.3■□□□□ 0.368e-6■□□□□ 8.4
LIG1-204ENST00000542460 ITM2CQ9NQX7 267 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 VPS45Q9NRW7 570 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 PCYOX1Q9UHG3 505 aa17.3■□□□□ 0.36
LIG1-204ENST00000542460 A0A1W2PQ67 120 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 TRAFD1O14545 582 aaPredicted RBP17.29■□□□□ 0.36
LIG1-204ENST00000542460 AXIN1O15169 862 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 ZNF217O75362 1048 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 CA4P22748 312 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 ITGB7P26010 798 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 CCDC15Q0P6D6 951 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 PRPSAP1Q14558 356 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 IHHQ14623 411 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 POM121L1PQ3SYA9 428 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 DNTTIP2Q5QJE6 756 aaKnown RBP17.29■□□□□ 0.36
LIG1-204ENST00000542460 CFAP58Q5T655 872 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 C4orf22Q6V702 233 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 USP30Q70CQ3 517 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 KLHL7Q8IXQ5 586 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 SPATA22Q8NHS9 363 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 TADA1Q96BN2 335 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 OMDQ99983 421 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 HDAC8Q9BY41 377 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 FAM126AQ9BYI3 521 aaPredicted RBP17.29■□□□□ 0.36
LIG1-204ENST00000542460 TPSD1Q9BZJ3 242 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 FBXL12Q9NXK8 326 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 PAK5Q9P286 719 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 DKK3Q9UBP4 350 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 FAM153AQ9UHL3 310 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 NCKAP1Q9Y2A7 1128 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 AAR2Q9Y312 384 aaKnown RBP17.29■□□□□ 0.36
LIG1-204ENST00000542460 RAI2Q9Y5P3 530 aa17.29■□□□□ 0.36
LIG1-204ENST00000542460 C16orf96A6NNT2 1141 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 HTRA2O43464 458 aaPredicted RBP17.28■□□□□ 0.36
LIG1-204ENST00000542460 GALR2O43603 387 aaPredicted RBP17.28■□□□□ 0.36
LIG1-204ENST00000542460 ANXA9O76027 345 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 ECEL1O95672 775 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 GAS8O95995 478 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 ETS1P14921 441 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 PSMB4P28070 264 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 TPMTP51580 245 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 METAP1P53582 386 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 ANGPT1Q15389 498 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 ZNF528Q3MIS6 628 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 BRAT1Q6PJG6 821 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 KBTBD6Q86V97 674 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 HDDC3Q8N4P3 179 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 AADATQ8N5Z0 425 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 PAF1Q8N7H5 531 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 GLIS1Q8NBF1 620 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 GANCQ8TET4 914 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 SPOCK2Q92563 424 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 SLCO2A1Q92959 643 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 ARRDC3Q96B67 414 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 ECHDC3Q96DC8 303 aa17.28■□□□□ 0.36
LIG1-204ENST00000542460 USP36Q9P275 1121 aaKnown RBP17.28■□□□□ 0.36
LIG1-204ENST00000542460 A0A1W2PP55 124 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 TSPAN11A1L157 253 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 F5H423 210 aaPredicted RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 RNASEH2AO75792 299 aaKnown RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 METTL18O95568 372 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 MT-CYBP00156 380 aaPredicted RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 RPL22P35268 128 aaKnown RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 DRD3P35462 400 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 GEMP55040 296 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 POLR2LP62875 67 aaKnown RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 DMWDQ09019 674 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 CNTN1Q12860 1018 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 TRAF2Q12933 501 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 MPP3Q13368 585 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 ARMC12Q5T9G4 340 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 ERN2Q76MJ5 926 aaKnown RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 PRUNE1Q86TP1 453 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 LONP2Q86WA8 852 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 MNS1Q8NEH6 495 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 PDCD6IPQ8WUM4 868 aaKnown RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 OXNAD1Q96HP4 312 aaPredicted RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 TDRD1Q9BXT4 1180 aaKnown RBP17.27■□□□□ 0.36
LIG1-204ENST00000542460 PCDH9Q9HC56 1237 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 UBP1Q9NZI7 540 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 FZD4Q9ULV1 537 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 PCDHB9Q9Y5E1 797 aa17.27■□□□□ 0.36
LIG1-204ENST00000542460 GOLGA6CA6NDK9 693 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 GOLGA6BA6NDN3 693 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 FZD6O60353 706 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 PMPCBO75439 489 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 PGLSO95336 258 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 IGLV3-19P01714 112 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 KRT14P02533 472 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms