RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 COL4A6Q14031 1691 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 PRR5-ARHGAP8B1AHC4 643 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 ENPP3O14638 875 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 PRAMEF11O60813 436 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 RAMP2O60895 175 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 TOP3BO95985 862 aaKnown RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 MT-CYBP00156 380 aaPredicted RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 TPH1P17752 444 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 GM2AP17900 193 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 ATP5F1P24539 256 aaPredicted RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 CPOXP36551 454 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 RPL14P50914 215 aaKnown RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 ACTR3P61158 418 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 ARHGAP8P85298 464 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 SLC34A1Q06495 639 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 NSUN2Q08J23 767 aaKnown RBP eCLIP9.96□□□□□ -0.82
SS18-205ENST00000542420 SERINC3Q13530 473 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 PSMD5Q16401 504 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 FAM83EQ2M2I3 478 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 AGAP9Q5VTM2 703 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 LHX8Q68G74 356 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 MAVSQ7Z434 540 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 NPAS4Q8IUM7 802 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 SLC22A9Q8IVM8 553 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 CENPLQ8N0S6 344 aaPredicted RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 TDRD5Q8NAT2 981 aaKnown RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 ACTRT2Q8TDY3 377 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 PRR11Q96HE9 360 aaPredicted RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 GPR78Q96P69 363 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 APOL2Q9BQE5 337 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 EBF4Q9BQW3 602 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 POLR1EQ9GZS1 481 aaKnown RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 HMX1Q9NP08 348 aaPredicted RBP9.96□□□□□ -0.82
SS18-205ENST00000542420 MARCH5Q9NX47 278 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 VPS28Q9UK41 221 aa9.96□□□□□ -0.82
SS18-205ENST00000542420 TRPC5OSA6NMA1 111 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 DIAPH2O60879 1101 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 LYPLA1O75608 230 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 VAPBO95292 243 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 WISP3O95389 354 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 LATS1O95835 1130 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 EFEMP2O95967 443 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 KITP10721 976 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ELNP15502 786 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 OGNP20774 298 aaKnown RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 GABRB3P28472 473 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 SLC1A2P43004 574 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ALDH18A1P54886 795 aaKnown RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 SLC12A2P55011 1212 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 IRX4P78413 519 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 POU6F1Q14863 301 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 FAM182AQ5T1J6 154 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ESRP1Q6NXG1 681 aaKnown RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 FUT10Q6P4F1 479 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 KLC3Q6P597 504 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ACAD11Q709F0 780 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 CRIPAKQ8N1N5 446 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 EZH1Q92800 747 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 PLD4Q96BZ4 506 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 HMCESQ96FZ2 354 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ZNF419Q96HQ0 510 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 ASB2Q96Q27 587 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 YIPF3Q9GZM5 350 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 NDFIP2Q9NV92 336 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 PNPOQ9NVS9 261 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ARMCX1Q9P291 453 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 MARCOQ9UEW3 520 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 PRPF19Q9UMS4 504 aaKnown RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 ARIH1Q9Y4X5 557 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 PLXNA4Q9HCM2 1894 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 MMP2P08253 660 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 SBK3P0C264 359 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 OR4Q2P0C623 313 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 CPB1P15086 417 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 PPP3CCP48454 512 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 TUFMP49411 452 aaKnown RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 NFKB2Q00653 900 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 IRF9Q00978 393 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 PFKPQ01813 784 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 LBRQ14739 615 aaKnown RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 POLD3Q15054 466 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 ACAP2Q15057 778 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 DDR2Q16832 855 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ACSBG2Q5FVE4 666 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 FAM171A1Q5VUB5 890 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 SEL1L3Q68CR1 1132 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 FAM45BPQ6NSW5 357 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 FBXL22Q6P050 247 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 PGM2L1Q6PCE3 622 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 SLC30A9Q6PML9 568 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ZNF783Q6ZMS7 281 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 CHST9Q7L1S5 443 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 MYLK4Q86YV6 388 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 ULK2Q8IYT8 1036 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 FSTL5Q8N475 847 aaPredicted RBP9.95□□□□□ -0.82
SS18-205ENST00000542420 TTC8Q8TAM2 541 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 ARRDC2Q8TBH0 407 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 FAM45AQ8TCE6 357 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 RAET1EQ8TD07 263 aa9.95□□□□□ -0.82
SS18-205ENST00000542420 MAELQ96JY0 434 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms