RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 RENBPP51606 427 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 AP1S1P61966 158 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 RPS21P63220 83 aaKnown RBP13.26□□□□□ -0.29
LTBR-208ENST00000541005 SLC10A7Q0GE19 358 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 ZNF423Q2M1K9 1284 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 HLA-BQ31612 363 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 SLC45A4Q5BKX6 768 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 BRAT1Q6PJG6 821 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 LAYNQ6UX15 382 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 RAD9BQ6WBX8 426 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 SRLQ86TD4 932 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 RHOT1Q8IXI2 618 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 SKA1Q96BD8 255 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 ECHDC3Q96DC8 303 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 TSGA13Q96PP4 275 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 RNF157Q96PX1 679 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 BAG1Q99933 345 aaPredicted RBP13.26□□□□□ -0.29
LTBR-208ENST00000541005 MGME1Q9BQP7 344 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 FNDC3AQ9Y2H6 1198 aaKnown RBP13.26□□□□□ -0.29
LTBR-208ENST00000541005 REXO2Q9Y3B8 237 aaKnown RBP13.26□□□□□ -0.29
LTBR-208ENST00000541005 PCDHGB2Q9Y5G2 931 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 SNX11Q9Y5W9 270 aa13.26□□□□□ -0.29
LTBR-208ENST00000541005 LRRD1A4D1F6 860 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 MUSKO15146 869 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 DFNA5O60443 496 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 PCDH8O95206 1070 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 PIGNO95427 931 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 CD59P13987 128 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 CR2P20023 1033 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 MAT2AP31153 395 aaKnown RBP13.25□□□□□ -0.29
LTBR-208ENST00000541005 C21orf59P57076 290 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 ZNF235Q14590 738 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 TAZQ16635 292 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 UAP1L1Q3KQV9 507 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 PPM1JQ5JR12 505 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 RALGPS1Q5JS13 557 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 SEL1L3Q68CR1 1132 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 SLC9A4Q6AI14 798 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 ADAT2Q7Z6V5 191 aaKnown RBP13.25□□□□□ -0.29
LTBR-208ENST00000541005 TEX26Q8N6G2 289 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 ASB12Q8WXK4 309 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 MAML1Q92585 1016 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 FEM1CQ96JP0 617 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 C1QTNF2Q9BXJ5 285 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 SUV39H2Q9H5I1 410 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 GAREM1Q9H706 876 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 ATP13A3Q9H7F0 1226 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 AASDHPPTQ9NRN7 309 aa13.25□□□□□ -0.29
LTBR-208ENST00000541005 DDX56Q9NY93 547 aaKnown RBP13.25□□□□□ -0.29
LTBR-208ENST00000541005 PTPRBP23467 1997 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 RCCD1A6NED2 376 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 TRAFD1O14545 582 aaPredicted RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 PJA2O43164 708 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 SPOPO43791 374 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 PCDHGA12O60330 932 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 SOCS5O75159 536 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 KCNK5O95279 499 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 KRT1P04264 644 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 CEACAM1P13688 526 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 TIMP2P16035 220 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 PRLRP16471 622 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 MX2P20592 715 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 HNRNPA2B1P22626 353 aaKnown RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 SERPINA4P29622 427 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 MMP13P45452 471 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 NOP2P46087 812 aaKnown RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 NXPH1P58417 271 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 GBE1Q04446 702 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 HNRNPDQ14103 355 aaKnown RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 FGL2Q14314 439 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 IFI16Q16666 785 aaKnown RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 ALG1LQ6GMV1 187 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 TIGD7Q6NT04 549 aaPredicted RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 DBX2Q6ZNG2 339 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 BBS5Q8N3I7 341 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 PGBD5Q8N414 524 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 PLD5Q8N7P1 536 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 DENND6BQ8NEG7 585 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 TPCN2Q8NHX9 752 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 FAM174AQ8TBP5 190 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 NSMCE1Q8WV22 266 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 HDAC11Q96DB2 347 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 LENG8Q96PV6 779 aaPredicted RBP13.24□□□□□ -0.29
LTBR-208ENST00000541005 NUDCD1Q96RS6 583 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 ERVMER34-1Q9H9K5 563 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 IL21RQ9HBE5 538 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 GPR27Q9NS67 375 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 DTLQ9NZJ0 730 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 AMACRQ9UHK6 382 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 GGT7Q9UJ14 662 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 SALL4Q9UJQ4 1053 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 TFR2Q9UP52 801 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 ITM2BQ9Y287 266 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 ALG6Q9Y672 507 aa13.24□□□□□ -0.29
LTBR-208ENST00000541005 KNTC1P50748 2209 aa13.23□□□□□ -0.29
LTBR-208ENST00000541005 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.23□□□□□ -0.29
LTBR-208ENST00000541005 TLR4O00206 839 aa13.23□□□□□ -0.29
LTBR-208ENST00000541005 SLC31A1O15431 190 aa13.23□□□□□ -0.29
LTBR-208ENST00000541005 YKT6O15498 198 aa13.23□□□□□ -0.29
LTBR-208ENST00000541005 HTRA2O43464 458 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms