RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	PEMT	Q9UBM1	199 aa		6.26	□□□□□ -1.41
YBX3-210	ENST00000540975	CNOT7	Q9UIV1	285 aa	Known RBP	6.26	□□□□□ -1.41
YBX3-210	ENST00000540975	IGLV5-52	A0A0A0MRZ9	124 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	TPD52L2	O43399	206 aa	Known RBP	6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	GUCY1B2	O75343	617 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	SERPINI2	O75830	405 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	VNN2	O95498	520 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	UROD	P06132	367 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	TFPI	P10646	304 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	ZNF8	P17098	575 aa	Predicted RBP	6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	PTPN2	P17706	415 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	PSMC2	P35998	433 aa	Known RBP	6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	SEC61A1	P61619	476 aa	Known RBP	6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	KIF5A	Q12840	1032 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	BIRC3	Q13489	604 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	LRRC8D	Q7L1W4	858 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	MYRIP	Q8NFW9	859 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	TMED6	Q8WW62	240 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	TRIB2	Q92519	343 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	BABAM1	Q9NWV8	329 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	IL1RAPL1	Q9NZN1	696 aa		6.25	□□□□□ -1.41
YBX3-210	ENST00000540975	DYTN	A2CJ06	578 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	KLRF2	D3W0D1	207 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975		J3KR12	359 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	ATP2C2	O75185	946 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	POLB	P06746	335 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	SLC2A4	P14672	509 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	C21orf33	P30042	268 aa	Predicted RBP	6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	YWHAZ	P63104	245 aa	Known RBP	6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	TLE2	Q04725	743 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	TDG	Q13569	410 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	HLF	Q16534	295 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	ZNF667	Q5HYK9	610 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	TYW3	Q6IPR3	259 aa	Known RBP	6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	FAM160B2	Q86V87	743 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	DCP1B	Q8IZD4	617 aa	Known RBP	6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	CPXCR1	Q8N123	301 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	TCP11L2	Q8N4U5	519 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	RBMXL3	Q8N7X1	1067 aa	Known RBP	6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	MORC4	Q8TE76	937 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	TXNDC15	Q96J42	360 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	GPR63	Q9BZJ6	419 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	IL25	Q9H293	177 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	OCIAD1	Q9NX40	245 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	GGA3	Q9NZ52	723 aa		6.24	□□□□□ -1.41
YBX3-210	ENST00000540975	EME2	A4GXA9	379 aa	Predicted RBP	6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	LINC01553	A4QN01	128 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	TIMM23	O14925	209 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	EIF3J	O75822	258 aa	Known RBP	6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	ZBTB11	O95625	1053 aa	Predicted RBP	6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	PPP1R3D	O95685	299 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	ART1	P52961	327 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	CDH15	P55291	814 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	RUNX2	Q13950	521 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	SOWAHA	Q2M3V2	549 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	EFHC1	Q5JVL4	640 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	CES5A	Q6NT32	575 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	PRSS57	Q6UWY2	283 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	TBC1D26	Q86UD7	250 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	AADAT	Q8N5Z0	425 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	C6orf106	Q9H6K1	298 aa	Predicted RBP	6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	RRN3	Q9NYV6	651 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	OR6C3	Q9NZP0	311 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	PROCR	Q9UNN8	238 aa		6.23	□□□□□ -1.41
YBX3-210	ENST00000540975	PRSS44	E7EML9	344 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	RGS11	O94810	467 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	RPL3	P39023	403 aa	Known RBP	6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	NR1H2	P55055	460 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	CLDN2	P57739	230 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	ESCO2	Q56NI9	601 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	ZNF766	Q5HY98	468 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	ARMC9	Q7Z3E5	817 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	SFTPA2	Q8IWL1	248 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	SMC5	Q8IY18	1101 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	PLD5	Q8N7P1	536 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	SNAPC3	Q92966	411 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	FIZ1	Q96SL8	496 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	INTS2	Q9H0H0	1204 aa	Known RBP	6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	TTYH1	Q9H313	450 aa	Predicted RBP	6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	SNTG1	Q9NSN8	517 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	BEX4	Q9NWD9	120 aa	Predicted RBP	6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	HCN3	Q9P1Z3	774 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	KIAA1456	Q9P272	454 aa		6.22	□□□□□ -1.41
YBX3-210	ENST00000540975	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	6.22	□□□□□ -1.41
YBX3-210	ENST00000540975		A0A0U1RQJ8	604 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	HSPB2	A8KAH6	182 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	IFIT1	P09914	478 aa	Known RBP	6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	PCNA	P12004	261 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	MAPK9	P45984	424 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	HDAC4	P56524	1084 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	KRTAP10-9	P60411	292 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	TUBA1B	P68363	451 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	EFNB1	P98172	346 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	GRSF1	Q12849	480 aa	Known RBP eCLIP	6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	ARHGEF6	Q15052	776 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	HSPB2	Q16082	182 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	SERTAD4-AS1	Q5TG53	156 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	SLC22A25	Q6T423	547 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	KLHL24	Q6TFL4	600 aa		6.21	□□□□□ -1.42
YBX3-210	ENST00000540975	CCDC129	Q6ZRS4	1044 aa		6.21	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms