RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 MFSD6LQ8IWD5 586 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 DENND6AQ8IWF6 608 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CPXM2Q8N436 756 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 ST13P5Q8NFI4 369 aaPredicted RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 OR13J1Q8NGT2 312 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 GDPD5Q8WTR4 605 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CDKL2Q92772 493 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SGSM3Q96HU1 749 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 LRRC3BQ96PB8 259 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 FAM111AQ96PZ2 611 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 RBBP8Q99708 897 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 LINC00597Q9H2U6 94 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 NKX2-4Q9H2Z4 354 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 TASP1Q9H6P5 420 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CAB39LQ9H9S4 337 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 FGFR1OP2Q9NVK5 253 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 VPS28Q9UK41 221 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CHKBQ9Y259 395 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SPO11Q9Y5K1 396 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 C2orf16Q68DN1 1984 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 A0A0U1RQS6 177 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 OR51F1A6NGY5 319 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 RFXAPO00287 272 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 AURKAO14965 403 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 VIMP08670 466 aaKnown RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 GP5P40197 560 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CTSOP43234 321 aaPredicted RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SERPINB9P50453 376 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 HNRNPH2P55795 449 aaKnown RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CDK18Q07002 472 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 NAB1Q13506 487 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CDH18Q13634 790 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 DLG2Q15700 870 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 ATXN7L2Q5T6C5 722 aaPredicted RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 TSTD2Q5T7W7 516 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CES4AQ5XG92 561 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 CHRDL2Q6WN34 429 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 TMEM25Q86YD3 366 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 DCLK2Q8N568 766 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PTPRN2Q92932 1015 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 RSPRY1Q96DX4 576 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 FEM1CQ96JP0 617 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 MAGEB18Q96M61 343 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PPP1R2P1Q96PQ5 205 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SRPK1Q96SB4 655 aaKnown RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PBX4Q9BYU1 374 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 PRKD2Q9BZL6 878 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 SLC13A1Q9BZW2 595 aa12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 MRM3Q9HC36 420 aaKnown RBP12.39□□□□□ -0.43
AP003559.1-201ENST00000540906 LDB2O43679 373 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 ZWINTO95229 277 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 DHRS4L1P0CG22 281 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 HOXA9P31269 272 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 TRAF2Q12933 501 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 CTBP1Q13363 440 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 PDE1CQ14123 709 aaPredicted RBP12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF789Q5FWF6 425 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 C16orf46Q6P387 395 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF449Q6P9G9 518 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 NDUFAF2Q8N183 169 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 MYLIPQ8WY64 445 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 MTBPQ96DY7 904 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 CPNE1Q99829 537 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 SLCO1B3Q9NPD5 702 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 EMCNQ9ULC0 261 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 PCDHGC4Q9Y5F7 938 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 ARL5AQ9Y689 179 aa12.38□□□□□ -0.43
AP003559.1-201ENST00000540906 MROH6A6NGR9 719 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 AP3B1O00203 1094 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 COPEO14579 308 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TRIM24O15164 1050 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 SERPINF2P08697 491 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 HNRNPA1P09651 372 aaKnown RBP eCLIP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 GKP32189 559 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 AVPR1AP37288 418 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 SLC1A2P43004 574 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 LIMK2P53671 638 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TMPRSS15P98073 1019 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 IL9RQ01113 521 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 DNAJC3Q13217 504 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 RFTN1Q14699 578 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 GRM3Q14832 879 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF77Q15935 545 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 GRTP1Q5TC63 336 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 HHATQ5VTY9 493 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 KIAA0930Q6ICG6 404 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 FSTL4Q6MZW2 842 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF783Q6ZMS7 281 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 FAM47EQ6ZV65 393 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 OR6K2Q8NGY2 324 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 VOPP1Q96AW1 172 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ALKBH8Q96BT7 664 aaKnown RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 NUDCD1Q96RS6 583 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 RANBP9Q96S59 729 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 MECRQ9BV79 373 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 SCUBE2Q9NQ36 999 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TDP1Q9NUW8 608 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF358Q9NW07 568 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 WNT6Q9Y6F9 365 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TRANK1O15050 2925 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms