RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PSME2Q9UL46 239 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 ASF1AQ9Y294 204 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 FAM208AQ9UK61 1670 aaKnown RBP14.21□□□□□ -0.13
USP3-204ENST00000540797 SGTAO43765 313 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 NTSP30990 170 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 ERVK-21P61565 698 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 FSTL1Q12841 308 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 TRPC4APQ8TEL6 797 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 SLC39A8Q9C0K1 460 aa14.21□□□□□ -0.13
USP3-204ENST00000540797 APOBEC3GQ9HC16 384 aaKnown RBP14.21□□□□□ -0.13
USP3-204ENST00000540797 NDRG2Q9UN36 371 aaKnown RBP14.21□□□□□ -0.13
USP3-204ENST00000540797 GSAPA4D1B5 854 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 MFSD11O43934 449 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 PRNPP04156 253 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ATP5F1P24539 256 aaPredicted RBP14.21□□□□□ -0.14
USP3-204ENST00000540797 PURAQ00577 322 aaKnown RBP14.21□□□□□ -0.14
USP3-204ENST00000540797 ELP6Q0PNE2 266 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 LINGO4Q6UY18 593 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 CDK20Q8IZL9 346 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 DEFB107AQ8IZN7 70 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 SPPL2AQ8TCT8 520 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 TFAP2BQ92481 460 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ALG3Q92685 438 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ART4Q93070 314 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 PLD4Q96BZ4 506 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 TIFAQ96CG3 184 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ZFP14Q9HCL3 533 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 PHPT1Q9NRX4 125 aaPredicted RBP14.21□□□□□ -0.14
USP3-204ENST00000540797 PBX3P40426 434 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 PTPN9P43378 593 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ENPEPQ07075 957 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 TBL3Q12788 808 aaKnown RBP14.21□□□□□ -0.14
USP3-204ENST00000540797 ZDHHC20Q5W0Z9 365 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 PRMT9Q6P2P2 845 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ZNF621Q6ZSS3 439 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 ADAMTSL2Q86TH1 951 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 TMEM132CQ8N3T6 1108 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 HEXDCQ8WVB3 486 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 PAWRQ96IZ0 340 aaKnown RBP14.21□□□□□ -0.14
USP3-204ENST00000540797 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.21□□□□□ -0.14
USP3-204ENST00000540797 TBC1D30Q9Y2I9 924 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 MRPS17Q9Y2R5 130 aaKnown RBP14.21□□□□□ -0.14
USP3-204ENST00000540797 RAI2Q9Y5P3 530 aa14.21□□□□□ -0.14
USP3-204ENST00000540797 KCNU1A8MYU2 1149 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 LRCH4O75427 683 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 NUDT14O95848 222 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 ADSSP30520 456 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 NAGLUP54802 743 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 GNA12Q03113 381 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 TRIP4Q15650 581 aaPredicted RBP14.2□□□□□ -0.14
USP3-204ENST00000540797 ZCWPW2Q504Y3 356 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 STK32AQ8WU08 396 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 FUBP3Q96I24 572 aaKnown RBP eCLIP14.2□□□□□ -0.14
USP3-204ENST00000540797 MRASO14807 208 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 HSPA13P48723 471 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 DAOAP59103 153 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 TPGS2Q68CL5 300 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 OXNAD1Q96HP4 312 aaPredicted RBP14.2□□□□□ -0.14
USP3-204ENST00000540797 DMAC2Q9NW81 257 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 FCHO1O14526 889 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 NOL4O94818 638 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 IFNA16P05015 189 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 PBX1P40424 430 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 TRAF2Q12933 501 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 IYDQ6PHW0 289 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 OTOP3Q7RTS5 596 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 TRIM69Q86WT6 500 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 CYP4X1Q8N118 509 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 TMCO5AQ8N6Q1 288 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 OR10G6Q8NH81 332 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 KCTD4Q8WVF5 259 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 ATXN2LQ8WWM7 1075 aaKnown RBP14.2□□□□□ -0.14
USP3-204ENST00000540797 RERGQ96A58 199 aaPredicted RBP14.2□□□□□ -0.14
USP3-204ENST00000540797 AVILO75366 819 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 CYP4F8P98187 520 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 CAP1Q01518 475 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 GAD2Q05329 585 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 RCN1Q15293 331 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 ADCK1Q86TW2 530 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 RAVER1Q8IY67 606 aaKnown RBP14.2□□□□□ -0.14
USP3-204ENST00000540797 CCDC167Q9P0B6 97 aa14.2□□□□□ -0.14
USP3-204ENST00000540797 A0A1W2PQ45 241 aaPredicted RBP14.19□□□□□ -0.14
USP3-204ENST00000540797 A0A1W2PQY0 241 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 VGLL3A8MV65 326 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 SERPINI2O75830 405 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 MLYCDO95822 493 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 NQO1P15559 274 aaKnown RBP14.19□□□□□ -0.14
USP3-204ENST00000540797 ATP6V1C1P21283 382 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 RABGGTBP53611 331 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 POU5F1Q01860 360 aaKnown RBP14.19□□□□□ -0.14
USP3-204ENST00000540797 TMC5Q6UXY8 1006 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 OR14C36Q8NHC7 312 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 ZNF398Q8TD17 642 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 SLC40A1Q9NP59 571 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 H3BQF6 201 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 AUHQ13825 339 aaKnown RBP14.19□□□□□ -0.14
USP3-204ENST00000540797 TTC33Q6PID6 262 aaPredicted RBP14.19□□□□□ -0.14
USP3-204ENST00000540797 EFCAB3Q8N7B9 438 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 COL26A1Q96A83 441 aa14.19□□□□□ -0.14
USP3-204ENST00000540797 FAXDC2Q96IV6 333 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms