RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ZNF564Q8TBZ8 553 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 USP7Q93009 1102 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 PGAP3Q96FM1 320 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 DHTKD1Q96HY7 919 aaPredicted RBP11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 CMKLR1Q99788 373 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 B3GNT4Q9C0J1 378 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 INTS2Q9H0H0 1204 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 MBNL1Q9NR56 388 aaKnown RBP11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 TMEM51Q9NW97 253 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 FOXJ2Q9P0K8 574 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 ZNF212Q9UDV6 495 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 APPL1Q9UKG1 709 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 PAXBP1Q9Y5B6 917 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 SCN8AQ9UQD0 1980 aa11.79□□□□□ -0.52
CLSTN3-209ENST00000539982 UNC13CQ8NB66 2214 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 CLEC18AA5D8T8 446 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 C9orf172C9J069 976 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 KRIT1O00522 736 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 MMP20O60882 483 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 SRGAP2O75044 1071 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 RASGRP1O95267 797 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 SMC2O95347 1197 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 POP4O95707 220 aaKnown RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 ERBB2P04626 1255 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 PNLIPP16233 465 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 TFE3P19532 575 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 ETV5P41161 510 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 MAPK10P53779 464 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 STIM1Q13586 685 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 MYLK3Q32MK0 819 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 CLEC18BQ6UXF7 455 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 PTRH1Q86Y79 214 aaKnown RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 CCNJLQ8IV13 435 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 HID1Q8IV36 788 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 Q8N9G6 341 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 TP53I13Q8NBR0 393 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 CLEC18CQ8NCF0 446 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 GPR156Q8NFN8 814 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 OR6K2Q8NGY2 324 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 SPATA20Q8TB22 786 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 NT5C3BQ969T7 300 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 TSACCQ96A04 125 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 VOPP1Q96AW1 172 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 EPAS1Q99814 870 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 SLC12A9Q9BXP2 914 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 OSBPL1AQ9BXW6 950 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 TM6SF2Q9BZW4 377 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 SCAND2PQ9GZW5 306 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 STAP1Q9ULZ2 295 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 PCDHGC3Q9UN70 934 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 ACTL7AQ9Y615 435 aa11.78□□□□□ -0.52
CLSTN3-209ENST00000539982 BECN2A8MW95 431 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 AGRPO00253 132 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 UGT2B4P06133 528 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 GLB1P16278 677 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 HTR1BP28222 390 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 USP8P40818 1118 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 RNASE9P60153 205 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 SNRPD1P62314 119 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 FOXK1P85037 733 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 DEUP1Q05D60 604 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 POLD3Q15054 466 aaPredicted RBP11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 IGFBP7Q16270 282 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 ALG11Q2TAA5 492 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 KLHL40Q2TBA0 621 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 TMEM164Q5U3C3 297 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 BORAQ6PGQ7 559 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 OGFOD3Q6PK18 319 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 ENPP7Q6UWV6 458 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 RD3Q7Z3Z2 195 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 ZDHHC17Q8IUH5 632 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 PASD1Q8IV76 773 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 HSCBQ8IWL3 235 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 TRIM59Q8IWR1 403 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 C1orf131Q8NDD1 294 aaKnown RBP11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 OR2AP1Q8NGE2 309 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 CXorf40AQ8TE69 158 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 FAM81BQ96LP2 452 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 KLHL32Q96NJ5 620 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 HAPLN3Q96S86 360 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 ZYG11BQ9C0D3 744 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 EPN3Q9H201 632 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 SYNCQ9H7C4 482 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 TMPRSS4Q9NRS4 437 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 TUBD1Q9UJT1 453 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 RNF215Q9Y6U7 377 aa11.77□□□□□ -0.53
CLSTN3-209ENST00000539982 USP9YO00507 2555 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 GSRP00390 522 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 ETFBP38117 255 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 CASRP41180 1078 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 SULT1E1P49888 294 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 GEMIN4P57678 1058 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 SRP54P61011 504 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 KCNAB2Q13303 367 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 NFATC4Q14934 902 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 LRRC14Q15048 493 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 IRF4Q15306 451 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 TCEA2Q15560 299 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms