RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 IRX2Q9BZI1 471 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 OSBPL2Q9H1P3 480 aa12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 GOLPH3Q9H4A6 298 aa12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 TMEM51Q9NW97 253 aa12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 SFMBT1Q9UHJ3 866 aa12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 ENTPD2Q9Y5L3 495 aa12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 ALG6Q9Y672 507 aa12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 SPENQ96T58 3664 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-208ENST00000538933 ICE1Q9Y2F5 2266 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 FBN2P35556 2912 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3DA0A087WVF3 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3IA0A087WXS9 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3EA0A087X179 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3KA0A087X1G2 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TARSL2A2RTX5 802 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3FA6NER0 549 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3LB9A6J9 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 NOBOXO60393 691 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 RNASEH1O60930 286 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 FTCDO95954 541 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 APOEP02649 317 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TUBB4AP04350 444 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 FYNP06241 537 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3HP0C7X1 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TGM2P21980 687 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 RBMS1P29558 406 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 DRD3P35462 400 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 DNA2P51530 1060 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBX4P57082 545 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 SERINC3Q13530 473 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 DNTTIP2Q5QJE6 756 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 MPP7Q5T2T1 576 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3GQ6DHY5 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3CQ6IPX1 549 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TRNP1Q6NT89 227 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 MSANTD2Q6P1R3 559 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TAC4Q86UU9 113 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TBC1D3Q8IZP1 549 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 UBL4BQ8N7F7 174 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 NIPA2Q8N8Q9 360 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 KDM1BQ8NB78 822 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 ZNF592Q92610 1267 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 EXTL1Q92935 676 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 PSMG3-AS1Q96PY0 264 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 KLHL11Q9NVR0 708 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 PCSK1NQ9UHG2 260 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 SLC12A6Q9UHW9 1150 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 ATXN7L1Q9ULK2 861 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 HYOU1Q9Y4L1 999 aa12.73□□□□□ -0.37
CLSTN3-208ENST00000538933 TTC34A8MYJ7 566 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 FFAR2O15552 330 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 IRAK2O43187 625 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 MSI1O43347 362 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 MAGEC1O60732 1142 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 ITGB2P05107 769 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 KRT7P08729 469 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 C5AR1P21730 350 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 CASQ1P31415 396 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 PCK1P35558 622 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 CSKP41240 450 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 DUSP3P51452 185 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 METAP1P53582 386 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 TLE1Q04724 770 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 RPS6KA1Q15418 735 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 PIK3R6Q5UE93 754 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 PRPF39Q86UA1 669 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 FAM131BQ86XD5 332 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 RHOT1Q8IXI2 618 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 UBE2Q2Q8WVN8 375 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 GRAMD1AQ96CP6 724 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 WDCPQ9H6R7 721 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 ZWILCHQ9H900 591 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 DNAI1Q9UI46 699 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 DMTF1Q9Y222 760 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 CA5BQ9Y2D0 317 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 SCN8AQ9UQD0 1980 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 ABCA12Q86UK0 2595 aa12.72□□□□□ -0.37
CLSTN3-208ENST00000538933 PRRC2CQ9Y520 2896 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 CTAGE9A4FU28 777 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 MIF4GDA9UHW6 222 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PSTPIP1O43586 416 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 LRCH4O75427 683 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PIAS2O75928 621 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 LATS1O95835 1130 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 FAM87AP0C7U9 286 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 SLC2A3P11169 496 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 TFE3P19532 575 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 MIPP30301 263 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 MAT2AP31153 395 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 CCR1P32246 355 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 NUDT1P36639 197 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 CETN2P41208 172 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 CTSOP43234 321 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PSMD8P48556 350 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 ETF1P62495 437 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 PITX1P78337 314 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 STAT4Q14765 748 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 EFHC2Q5JST6 749 aa12.71□□□□□ -0.37
CLSTN3-208ENST00000538933 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms