RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 MDGA1Q8NFP4 955 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 TSTD1Q8NFU3 115 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF473Q8WTR7 871 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 SORCS1Q8WY21 1168 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 MRRFQ96E11 262 aaKnown RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 EPAS1Q99814 870 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 KCNK9Q9NPC2 374 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 CACNA2D2Q9NY47 1150 aa12.13□□□□□ -0.47
CLIP1-208ENST00000537004 PSMC3IPQ9P2W1 217 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-208ENST00000537004 GFRA2O00451 464 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 AXIN1O15169 862 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 OPHN1O60890 802 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 APBB3O95704 486 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 HOXD9P28356 352 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF135P52742 658 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-208ENST00000537004 SEMA5AQ13591 1074 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 RASA2Q15283 850 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 TRABD2AQ86V40 505 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 CPXM2Q8N436 756 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 CAMKK1Q8N5S9 505 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 FRMD1Q8N878 549 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 WFDC5Q8TCV5 224 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 SLC39A13Q96H72 371 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 PRMT1Q99873 361 aaKnown RBP12.12□□□□□ -0.47
CLIP1-208ENST00000537004 SEPT10Q9P0V9 454 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 STOML2Q9UJZ1 356 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 SNX10Q9Y5X0 201 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 RAD54BQ9Y620 910 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 SPEGQ15772 3267 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 GON4LQ3T8J9 2241 aa12.12□□□□□ -0.47
CLIP1-208ENST00000537004 EBAG9O00559 213 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 IRAK2O43187 625 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 SPAG6O75602 509 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 PIAS1O75925 651 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 LRIG2O94898 1065 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CYBBP04839 570 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 FDFT1P37268 417 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 EIF4EBP2Q13542 120 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 NUGGCQ68CJ6 796 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 TMEM215Q68D42 235 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 KIAA1211LQ6NV74 962 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF534Q76KX8 674 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CEP68Q76N32 757 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 KIAA2013Q8IYS2 634 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CHPFQ8IZ52 775 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 NPWQ8N729 165 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 MGARPQ8TDB4 240 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 RLN3Q8WXF3 142 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 TMA16Q96EY4 203 aaKnown RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 SERPINB11Q96P15 392 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 PAFAH2Q99487 392 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 DHRS4Q9BTZ2 278 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 YY1AP1Q9H869 796 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 TLR6Q9Y2C9 796 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 STARD13Q9Y3M8 1113 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 TCRBV9S1A1TA0A576 114 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 ACSL4O60488 711 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 RPP40O75818 363 aaKnown RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 KRT15P19012 456 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 EPHB2P29323 1055 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 HLA-FP30511 346 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 MAGEA3P43357 314 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 NUMBP49757 651 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 RPS24P62847 133 aaKnown RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 RING1Q06587 406 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 WASHC5Q12768 1159 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 MPP2Q14168 576 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 LRRC14Q15048 493 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 BRMS1LQ5PSV4 323 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 PIK3R6Q5UE93 754 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 KBTBD6Q86V97 674 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CFAP52Q8N1V2 620 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 ANKRD42Q8N9B4 389 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 HMGB4Q8WW32 186 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CHMP6Q96FZ7 201 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CFAP36Q96G28 342 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 PRICKLE1Q96MT3 831 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF317Q96PQ6 595 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CYTH2Q99418 400 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CEP41Q9BYV8 373 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 OSBPL2Q9H1P3 480 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 CCDC134Q9H6E4 229 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 XAB2Q9HCS7 855 aaKnown RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 ARHGEF38Q9NXL2 777 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 NCDNQ9UBB6 729 aa12.11□□□□□ -0.47
CLIP1-208ENST00000537004 ZC3H7BQ9UGR2 993 aaKnown RBP12.11□□□□□ -0.47
CLIP1-208ENST00000537004 A0A1W2PQF6 199 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 TCRBV21S2A2A0A5A6 115 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 F5H423 210 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 TBL1XO60907 577 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF189O75820 626 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 NTSR1P30989 418 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SLC11A2P49281 568 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 PPIDQ08752 370 aaKnown RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 CCDC6Q16204 474 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 PREPLQ4J6C6 727 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 MPPE1Q53F39 396 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 ADGRD1Q6QNK2 874 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 NUDT18Q6ZVK8 323 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 ZNF567Q8N184 647 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms