RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 EBF3Q9H4W6 596 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 EURLQ9NYK6 297 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 VPS51Q9UID3 782 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 IKBKGQ9Y6K9 419 aa21.44■■□□□ 1.02
VPS28-212ENST00000530836 POC1B-GALNT4F8VUJ3 575 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 USP1O94782 785 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 MSH2P43246 934 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 CBX1P83916 185 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 LMAN2Q12907 356 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 NAB1Q13506 487 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 RUNX3Q13761 415 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 DMC1Q14565 340 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 CYTH1Q15438 398 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 PCID2Q5JVF3 399 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 DENND5AQ6IQ26 1287 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 TMEM25Q86YD3 366 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 WFDC5Q8TCV5 224 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 ATP2A3Q93084 1043 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 FEM1CQ96JP0 617 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 NUDCD1Q96RS6 583 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 APOL2Q9BQE5 337 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 DHRS4Q9BTZ2 278 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 MRM3Q9HC36 420 aaKnown RBP21.43■■□□□ 1.02
VPS28-212ENST00000530836 HPS4Q9NQG7 708 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 MOCS1Q9NZB8 636 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 SOX13Q9UN79 622 aa21.43■■□□□ 1.02
VPS28-212ENST00000530836 ARIH1Q9Y4X5 557 aaPredicted RBP21.43■■□□□ 1.02
VPS28-212ENST00000530836 LOC285095A0A1B0GVY8 99 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 ARSAP15289 507 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 OLIG2Q13516 323 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 CRYMQ14894 314 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 PLEKHG6Q3KR16 790 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 KBTBD12Q3ZCT8 623 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 SLC44A4Q53GD3 710 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 ADGRD1Q6QNK2 874 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 LRRC6Q86X45 466 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 CSGALNACT1Q8TDX6 532 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 CDKL2Q92772 493 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 KIFC1Q9BW19 673 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 PLAC1Q9HBJ0 212 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 ABCB8Q9NUT2 735 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 PLK2Q9NYY3 685 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 GTSE1Q9NYZ3 720 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 ACTL7BQ9Y614 415 aa21.42■■□□□ 1.02
VPS28-212ENST00000530836 NEDD8-MDP1E9PL57 170 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 MUSKO15146 869 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 INSIG1O15503 277 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 SNAP91O60641 907 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 TMCC1O94876 653 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 CR2P20023 1033 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 HLA-DPA1P20036 260 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 NR1D1P20393 614 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 GCAP28676 217 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 MAGOHP61326 146 aaKnown RBP21.41■■□□□ 1.02
VPS28-212ENST00000530836 CRADDP78560 199 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 SULT2A1Q06520 285 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 SIGLEC14Q08ET2 396 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 LAMB3Q13751 1172 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 ITPRIPL2Q3MIP1 535 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 CERCAMQ5T4B2 595 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 IFT43Q96FT9 208 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 LMLNQ96KR4 655 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 PAFAH2Q99487 392 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 ECT2Q9H8V3 914 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 SCUBE2Q9NQ36 999 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 PIH1D1Q9NWS0 290 aaKnown RBP21.41■■□□□ 1.02
VPS28-212ENST00000530836 SENP1Q9P0U3 644 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 FBXL21Q9UKT6 434 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 RPS6KL1Q9Y6S9 549 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 FAM169AQ9Y6X4 670 aa21.41■■□□□ 1.02
VPS28-212ENST00000530836 OTOL1A6NHN0 477 aaPredicted RBP21.4■■□□□ 1.02
VPS28-212ENST00000530836 FAM159BA6NKW6 160 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 A6NNZ2 444 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 ATP9BO43861 1147 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 NFATC1O95644 943 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 CD160O95971 181 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 TYRP14679 529 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 CA4P22748 312 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 CDK18Q07002 472 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 SLC1A5Q15758 541 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 PCSK7Q16549 785 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 TUBB8Q3ZCM7 444 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 LY6G5CQ5SRR4 150 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 IER5LQ5T953 404 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 LGSNQ5TDP6 509 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 APCDD1Q8J025 514 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 SH2D3CQ8N5H7 860 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.4■■□□□ 1.02
VPS28-212ENST00000530836 PPHLN1Q8NEY8 458 aaKnown RBP21.4■■□□□ 1.02
VPS28-212ENST00000530836 SLC44A1Q8WWI5 657 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 HEBP1Q9NRV9 189 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 ZNF180Q9UJW8 692 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 ADH1CP00326 375 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 FGF1P05230 155 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 INHBAP08476 426 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 ADRA1DP25100 572 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 CD70P32970 193 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 MAPK8P45983 427 aa21.4■■□□□ 1.02
VPS28-212ENST00000530836 SERPINH1P50454 418 aaKnown RBP21.4■■□□□ 1.02
VPS28-212ENST00000530836 SCNN1BP51168 640 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms