RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CAPN7Q9Y6W3 813 aa3.45□□□□□ -1.86
CD44-229ENST00000528672 FAM169AQ9Y6X4 670 aa3.45□□□□□ -1.86
CD44-229ENST00000528672 ZCCHC6Q5VYS8 1495 aaKnown RBP3.45□□□□□ -1.86
CD44-229ENST00000528672 FANCIQ9NVI1 1328 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 ARHGAP10A1A4S6 786 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 TMEM247A6NEH6 219 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 ERICH4A6NGS2 130 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 C17orf100A8MU93 164 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 BTBD18B2RXH4 712 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SNAP23O00161 211 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 UBE2CO00762 179 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 CTDSP2O14595 271 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 CTAGE5O15320 804 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 ADAM20O43506 726 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 PAGE4O60829 102 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SEC31AO94979 1220 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 CSPG5O95196 566 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 OR2C1O95371 312 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 NUDT3O95989 172 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 HLA-DQA2P01906 255 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 RB1P06400 928 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 ENO1P06733 434 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 RFPL3SP0C7P2 107 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 IRF1P10914 325 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 TYK2P29597 1187 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 EEF1DP29692 281 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 OAS2P29728 719 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 SKIV2L2P42285 1042 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 PTPN9P43378 593 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 BLKP51451 505 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 HSD17B4P51659 736 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 ZNF131P52739 623 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 YPEL5P62699 121 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 UBXN2AP68543 259 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 CSTF3Q12996 717 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 HNRNPA0Q13151 305 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 ARL13AQ5H913 290 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 ANKRD16Q6P6B7 361 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 TSSK4Q6SA08 328 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 CRELD2Q6UXH1 353 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 ZNF66Q6ZN08 573 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 FAM47EQ6ZV65 393 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 PRSS45Q7RTY3 260 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 FAM160B2Q86V87 743 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SCAIQ8N9R8 606 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 TERB1Q8NA31 727 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 POMGNT2Q8NAT1 580 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 APPL2Q8NEU8 664 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 IP6K1Q92551 441 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 GTF3C6Q969F1 213 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 CENPTQ96BT3 561 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SAT2Q96F10 170 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 ZNF764Q96H86 408 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 CCDC34Q96HJ3 373 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 PGAM5Q96HS1 289 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 RITA1Q96K30 269 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 ADAD1Q96M93 576 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 UROC1Q96N76 676 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 BBC3Q96PG8 261 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 H2AFJQ9BTM1 129 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 NDST4Q9H3R1 872 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 GRPEL1Q9HAV7 217 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 PDGFCQ9NRA1 345 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SEMA4GQ9NTN9 838 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 GIMAP4Q9NUV9 329 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-229ENST00000528672 ARGLU1Q9NWB6 273 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 DCAF16Q9NXF7 216 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 HOXC10Q9NYD6 342 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SEMA5BQ9P283 1151 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 CPSF2Q9P2I0 782 aaKnown RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 ZNHIT2Q9UHR6 403 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 HAO1Q9UJM8 370 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 A4GNTQ9UNA3 340 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 DTX4Q9Y2E6 619 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 SIRT4Q9Y6E7 314 aaPredicted RBP3.44□□□□□ -1.86
CD44-229ENST00000528672 AOX1Q06278 1338 aa3.44□□□□□ -1.86
CD44-229ENST00000528672 MANSC4A6NHS7 340 aaPredicted RBP3.43□□□□□ -1.86
CD44-229ENST00000528672 TP73O15350 636 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 KIF5CO60282 957 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 IPO7O95373 1038 aaKnown RBP3.43□□□□□ -1.86
CD44-229ENST00000528672 MT-CO3P00414 261 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 ADAP00813 363 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 SERPINC1P01008 464 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 IL1AP01583 271 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 AFPP02771 609 aaKnown RBP3.43□□□□□ -1.86
CD44-229ENST00000528672 TPM2P07951 284 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 PRR35P0CG20 571 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 FCGR2AP12318 317 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 SKILP12757 684 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 SCG2P13521 617 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 TBXAS1P24557 533 aaPredicted RBP3.43□□□□□ -1.86
CD44-229ENST00000528672 CD38P28907 300 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 MPGP29372 298 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 NRIP1P48552 1158 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 ZNF84P51523 738 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 YWHAZP63104 245 aaKnown RBP3.43□□□□□ -1.86
CD44-229ENST00000528672 CEBPZQ03701 1054 aaKnown RBP3.43□□□□□ -1.86
CD44-229ENST00000528672 DMWDQ09019 674 aa3.43□□□□□ -1.86
CD44-229ENST00000528672 TNFAIP1Q13829 316 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms