RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 IFT43Q96FT9 208 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 PLCD4Q9BRC7 762 aa20.9■□□□□ 0.94
VPS28-209ENST00000528142 CHD9Q3L8U1 2897 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 H0Y626 953 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 MPOP05164 745 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 FGF1P05230 155 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 CKMP06732 381 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 MYOGP15173 224 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 PFKLP17858 780 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 MZF1P28698 734 aaPredicted RBP20.89■□□□□ 0.93
VPS28-209ENST00000528142 CLCN4P51793 760 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 CTBP1Q13363 440 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 UGP2Q16851 508 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 SPRED3Q2MJR0 410 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 TRIM42Q8IWZ5 723 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 C2CD4AQ8NCU7 369 aaPredicted RBP20.89■□□□□ 0.93
VPS28-209ENST00000528142 ALG14Q96F25 216 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 LBHD1Q9BQE6 289 aaPredicted RBP20.89■□□□□ 0.93
VPS28-209ENST00000528142 CORO1BQ9BR76 489 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 FEM1AQ9BSK4 669 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 FAM167BQ9BTA0 163 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 SLC46A2Q9BY10 475 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 CAB39LQ9H9S4 337 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 CFAP97Q9P2B7 532 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 KLHL14Q9P2G3 628 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 LSM7Q9UK45 103 aaKnown RBP20.89■□□□□ 0.93
VPS28-209ENST00000528142 OBSL1O75147 1896 aa20.89■□□□□ 0.93
VPS28-209ENST00000528142 CHD7Q9P2D1 2997 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 TRAV19A0A0A6YYK7 116 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CCL16O15467 120 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 INSIG1O15503 277 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 LDB2O43679 373 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 SNAP91O60641 907 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 MYL4P12829 197 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 GMPRP36959 345 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 SLC1A2P43004 574 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 MAGEA10P43363 369 aaPredicted RBP20.88■□□□□ 0.93
VPS28-209ENST00000528142 MPP1Q00013 466 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 THOC5Q13769 683 aaKnown RBP20.88■□□□□ 0.93
VPS28-209ENST00000528142 DLG2Q15700 870 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 DBN1Q16643 649 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CES4AQ5XG92 561 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 NEPROQ6NW34 567 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 NLRP9Q7RTR0 991 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CLEC14AQ86T13 490 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 NUDCD3Q8IVD9 361 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CPXM2Q8N436 756 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 TSSK1BQ9BXA7 367 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 ASAH2Q9NR71 780 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 ABCF3Q9NUQ8 709 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 TMEM216Q9P0N5 145 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 ZNF510Q9Y2H8 683 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 A0A096LPK6 155 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 LINC01553A4QN01 128 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CSPG5O95196 566 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 NDST3O95803 873 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 PROCP04070 461 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 C2P06681 752 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 GSTA1P08263 222 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 NEFHP12036 1026 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CES1P23141 567 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 CCR2P41597 374 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 PPM1LQ5SGD2 360 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 RAB3IL1Q8TBN0 382 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 WFDC5Q8TCV5 224 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 E2F7Q96AV8 911 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 THOC1Q96FV9 657 aaKnown RBP20.88■□□□□ 0.93
VPS28-209ENST00000528142 RMDN2Q96LZ7 410 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 ZMYND15Q9H091 742 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 TLR9Q9NR96 1032 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 DNMT3BQ9UBC3 853 aaKnown RBP20.88■□□□□ 0.93
VPS28-209ENST00000528142 FBXO5Q9UKT4 447 aa20.88■□□□□ 0.93
VPS28-209ENST00000528142 MYLKQ15746 1914 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 TYW5A2RUC4 315 aaKnown RBP20.87■□□□□ 0.93
VPS28-209ENST00000528142 SCNN1BP51168 640 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 EPHA5P54756 1037 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 ACVR1Q04771 509 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 SHHQ15465 462 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 BBS7Q8IWZ6 715 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 PLD6Q8N2A8 252 aaKnown RBP20.87■□□□□ 0.93
VPS28-209ENST00000528142 C10orf82Q8WW14 230 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 GCNAQ96QF7 691 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 NUDCD1Q96RS6 583 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 C17orf80Q9BSJ5 609 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 HCFC1R1Q9NWW0 138 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 SLC39A10Q9ULF5 831 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 SH3BP1Q9Y3L3 701 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 KCTD3Q9Y597 815 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 CEP290O15078 2479 aa20.87■□□□□ 0.93
VPS28-209ENST00000528142 MYO1CO00159 1063 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 SLC7A4O43246 635 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 POLD2P49005 469 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 UBE3AQ05086 875 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 CAMK1Q14012 370 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 GALNT3Q14435 633 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 CHI3L2Q15782 390 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 INO80DQ53TQ3 878 aaPredicted RBP20.86■□□□□ 0.93
VPS28-209ENST00000528142 ZNF470Q6ECI4 717 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 LINGO4Q6UY18 593 aa20.86■□□□□ 0.93
VPS28-209ENST00000528142 KIAA0408Q6ZU52 694 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms