RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CEP112Q8N8E3 955 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MSANTD4Q8NCY6 345 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 C3orf20Q8ND61 904 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 OR10T2Q8NGX3 314 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 FEZF2Q8TBJ5 459 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CLEC4CQ8WTT0 213 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 RIN2Q8WYP3 895 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 NDRG1Q92597 394 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 ALG3Q92685 438 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 APBB2Q92870 758 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CD101Q93033 1021 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MYLPFQ96A32 169 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 SKA1Q96BD8 255 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TRIM43Q96BQ3 446 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 MCRS1Q96EZ8 462 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 HES6Q96HZ4 224 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PIWIL1Q96J94 861 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 VCPIP1Q96JH7 1222 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 B3GALT6Q96L58 329 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 RIPOR3Q96MK2 946 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 UROC1Q96N76 676 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CASD1Q96PB1 797 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 GDF15Q99988 308 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 RTP3Q9BQQ7 232 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 RHOXF2Q9BQY4 288 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CRB3Q9BUF7 120 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 TUBB2BQ9BVA1 445 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 ZNF518BQ9C0D4 1074 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 WDR12Q9GZL7 423 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 TSPYL1Q9H0U9 437 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PLEKHA4Q9H4M7 779 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 FAM124BQ9H5Z6 455 aaPredicted RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 NRDE2Q9H7Z3 1164 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 MRPL47Q9HD33 250 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 RBM12Q9NTZ6 932 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 PARVAQ9NVD7 372 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 CHCHD3Q9NX63 227 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 ASH2LQ9UBL3 628 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 EBF1Q9UH73 591 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 KIAA1257Q9ULG3 409 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 NR2E3Q9Y5X4 410 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 NUMBLQ9Y6R0 609 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 DGKBQ9Y6T7 804 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 ZFC3H1O60293 1989 aaKnown RBP4.31□□□□□ -1.72
CD44-226ENST00000527889 SCN8AQ9UQD0 1980 aa4.31□□□□□ -1.72
CD44-226ENST00000527889 PCM1Q15154 2024 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 TMEM191CA6NGB0 347 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 SIGLEC16A6NMB1 481 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 EFCAB8A8MWE9 144 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 KIAA1324LA8MWY0 1029 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 MIF4GDA9UHW6 222 aaKnown RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 F8VP50 259 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PI4K2BG5E9Z4 385 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ACOT7O00154 380 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PGRMC1O00264 195 aaKnown RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 DYNC1I1O14576 645 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 NRP1O14786 923 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 HGSO14964 777 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 PAPSS1O43252 624 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 MAFKO60675 156 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TADA2AO75478 443 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 BEST1O76090 585 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 KIAA0754O94854 1291 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TIMP1P01033 207 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 FGGP02679 453 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 OR4Q2P0C623 313 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 KRT3P12035 628 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CSF2RAP15509 400 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PRLRP16471 622 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CTNNA2P26232 953 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PCSK1P29120 753 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CTNNA1P35221 906 aaKnown RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 RFC1P35251 1148 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 WASP42768 502 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PAFAH1B1P43034 410 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 SLC6A11P48066 632 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 LHX1P48742 406 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 SLC11A1P49279 550 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PRIM2P49643 509 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 PEX5P50542 639 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 LGALS4P56470 323 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 MAP3K7CLP57077 242 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 DEFB103AP81534 67 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TSPY1Q01534 308 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 BTKQ06187 659 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ADIGQ0VDE8 80 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 ZNF268Q14587 947 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 SLC9A5Q14940 896 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 STILQ15468 1287 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TAF5Q15542 800 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CDO1Q16878 200 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 MSMPQ1L6U9 139 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 C15orf59Q2T9L4 293 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 C3orf36Q3SXR2 165 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CFAP221Q4G0U5 840 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 RAB6CQ53S08 254 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 TIGD7Q6NT04 549 aaPredicted RBP4.3□□□□□ -1.72
CD44-226ENST00000527889 TRNP1Q6NT89 227 aa4.3□□□□□ -1.72
CD44-226ENST00000527889 CNKSR3Q6P9H4 555 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms