RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KLK6Q92876 244 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 BTBD6Q96KE9 485 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 CNTNAP3BQ96NU0 1288 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 PSKH2Q96QS6 385 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 ANP32EQ9BTT0 268 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 CNTNAP3Q9BZ76 1288 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 ATP13A3Q9H7F0 1226 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 KLHL11Q9NVR0 708 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 FTSJ1Q9UET6 329 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 BTBD3Q9Y2F9 522 aa20.86■□□□□ 0.93
VPS28-206ENST00000526734 AKR1B15C9JRZ8 316 aaPredicted RBP20.85■□□□□ 0.93
VPS28-206ENST00000526734 KRT7P08729 469 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 SERPINA4P29622 427 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 SSR1P43307 286 aaKnown RBP20.85■□□□□ 0.93
VPS28-206ENST00000526734 CDH6P55285 790 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 AP1S1P61966 158 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 IL9RQ01113 521 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 PDK2Q15119 407 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 SHBQ15464 509 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 SRLQ86TD4 932 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 MAP7D3Q8IWC1 876 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 CXorf40AQ8TE69 158 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 EXOC2Q96KP1 924 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 MYOCQ99972 504 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 SCNM1Q9BWG6 230 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 SUV39H2Q9H5I1 410 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 KNL1Q8NG31 2342 aa20.85■□□□□ 0.93
VPS28-206ENST00000526734 TOR1BO14657 336 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 FPGTO14772 594 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 AMPD1P23109 780 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 RABIFP47224 123 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 LBRQ14739 615 aaKnown RBP20.84■□□□□ 0.93
VPS28-206ENST00000526734 TXNRD3NBQ6F5E7 133 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 ERAP2Q6P179 960 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 RHOT2Q8IXI1 618 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 ATPAF2Q8N5M1 289 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 TSEN2Q8NCE0 465 aaKnown RBP20.84■□□□□ 0.93
VPS28-206ENST00000526734 OR13H1Q8NG92 308 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 NSMCE1Q8WV22 266 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 ZNF670Q9BS34 389 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 NHEJ1Q9H9Q4 299 aaPredicted RBP20.84■□□□□ 0.93
VPS28-206ENST00000526734 FZD3Q9NPG1 666 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 GPR27Q9NS67 375 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 CA5BQ9Y2D0 317 aa20.84■□□□□ 0.93
VPS28-206ENST00000526734 ACACBO00763 2458 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 A0A1W2PQ67 120 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 FAM221BA6H8Z2 402 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 IGLON5A6NGN9 336 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 INSIG1O15503 277 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 SPINT1O43278 529 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 HYAL3O43820 417 aaPredicted RBP20.83■□□□□ 0.93
VPS28-206ENST00000526734 PAK4O96013 591 aaPredicted RBP20.83■□□□□ 0.93
VPS28-206ENST00000526734 CDK4P11802 303 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 TIMP2P16035 220 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 ADKP55263 362 aaKnown RBP20.83■□□□□ 0.93
VPS28-206ENST00000526734 TBX2Q13207 712 aaPredicted RBP20.83■□□□□ 0.93
VPS28-206ENST00000526734 FGL2Q14314 439 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 ZNF235Q14590 738 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 TMEM52BQ4KMG9 183 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 PRAMEF14Q5SWL7 426 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 GATAD2AQ86YP4 633 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 CALN1Q9BXU9 219 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 PACSIN1Q9BY11 444 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 TRIM5Q9C035 493 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 INTUQ9ULD6 942 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 ITM2BQ9Y287 266 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 MSRB2Q9Y3D2 182 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 CABIN1Q9Y6J0 2220 aa20.83■□□□□ 0.93
VPS28-206ENST00000526734 TMEM131Q92545 1883 aa20.83■□□□□ 0.92
VPS28-206ENST00000526734 COL5A1P20908 1838 aaPredicted RBP20.83■□□□□ 0.92
VPS28-206ENST00000526734 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.82■□□□□ 0.92
VPS28-206ENST00000526734 TM7SF2O76062 418 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 DKK1O94907 266 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 PIGNO95427 931 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 ARHGAP25P42331 645 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 POLR2LP62875 67 aaKnown RBP20.82■□□□□ 0.92
VPS28-206ENST00000526734 BCL2L1Q07817 233 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 UGP2Q16851 508 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 RALGPS1Q5JS13 557 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 Q6ZSR6 202 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 PTAR1Q7Z6K3 402 aaPredicted RBP20.82■□□□□ 0.92
VPS28-206ENST00000526734 SPOCK2Q92563 424 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 KLF6Q99612 283 aaPredicted RBP20.82■□□□□ 0.92
VPS28-206ENST00000526734 ETNK2Q9NVF9 386 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 PCDHGA1Q9Y5H4 931 aa20.82■□□□□ 0.92
VPS28-206ENST00000526734 TPRP12270 2363 aaKnown RBP20.82■□□□□ 0.92
VPS28-206ENST00000526734 CFAP69A5D8W1 941 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 TMEM8BA6NDV4 472 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 MAFKO60675 156 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 MTA2O94776 668 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 LDOC1O95751 146 aaPredicted RBP20.81■□□□□ 0.92
VPS28-206ENST00000526734 ARSEP51690 589 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 CLDN2P57739 230 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 ARHGAP36Q6ZRI8 547 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 KANSL1Q7Z3B3 1105 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 NETO2Q8NC67 525 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 KCTD6Q8NC69 237 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 RFFLQ8WZ73 363 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 ECHDC3Q96DC8 303 aa20.81■□□□□ 0.92
VPS28-206ENST00000526734 BMFQ96LC9 184 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms