RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ANGPT2O15123 496 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PGRMC2O15173 223 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC16A3O15427 465 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD3EAPO15446 510 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZSCAN9O15535 394 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LINC01565O15544 149 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RIPK2O43353 540 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PROM1O43490 865 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNFSF14O43557 240 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMPRSS11DO60235 418 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NEMFO60524 1076 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KINO60870 393 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMPD2O60906 423 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SOCS5O75159 536 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP6R2O75170 966 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PEX11AO75192 247 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AVILO75366 819 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC43A1O75387 559 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAF5LO75529 589 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GJB3O75712 270 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 BCAS2O75934 225 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TPPPO94811 219 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAMTA2O94983 1202 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 REC8O95072 547 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNC5CO95185 931 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LETM1O95202 739 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPDEFO95238 335 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR2C1O95371 312 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GCNT3O95395 438 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MATN4O95460 622 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LY86O95711 162 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAVIN2O95810 425 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CER1O95813 267 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPIG6BO95866 241 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FTCDO95954 541 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CRYABP02511 175 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 AMY1AP04745 511 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TPOP07202 933 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBBP07437 444 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRSS2P07478 247 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRPP07492 148 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCB1P08183 1280 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CELA2AP08217 269 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RHOXF2BP0C7M4 288 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATXN1LP0C7T5 689 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 EBLN1P0CF75 366 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR89BP0CG08 455 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRR23D2P0DMB1 279 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPCL4P0DMR1 293 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP2D6P10635 497 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TOP1P11387 765 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RARGP13631 454 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT5P13647 590 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SELLP14151 372 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FDPSP14324 419 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 COX7A2P14406 83 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHN1P15882 459 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PECAM1P16284 738 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF8P17098 575 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM11P17152 192 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TFEBP19484 476 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNA2P20248 432 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FGFR4P22455 802 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NR4A1P22736 598 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PROZP22891 400 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MMP8P22894 467 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPT2P23786 658 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL4RP24394 825 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MCM3P25205 808 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLRK1P26718 216 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TACR3P29371 465 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PBLDP30039 288 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD6P30203 668 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADSSP30520 456 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CORO1AP31146 461 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXA13P31271 388 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TLX1P31314 330 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CIITAP33076 1130 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GUCY1A2P33402 732 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SOAT1P35610 550 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GGT5P36269 586 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPOXP36551 454 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPLP40238 635 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PNPLA4P41247 253 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GARSP41250 739 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 VIPR2P41587 438 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ACAA2P42765 397 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTHFRP42898 656 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC15A1P46059 708 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ASMTP46597 345 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPA2P48052 419 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCP4P48539 62 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IFNAR2P48551 515 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NRIP1P48552 1158 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTDSS1P48651 473 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALDH7A1P49419 539 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HARS2P49590 506 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SULT1E1P49888 294 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NT5C2P49902 561 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KHKP50053 298 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms