RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FBP2O00757 339 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TIPRLO75663 272 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 HADHAP40939 763 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 SNX17Q15036 470 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TSPAN14Q8NG11 270 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 DIS3LQ8TF46 1054 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 DTNBP1Q96EV8 351 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 ZFRQ96KR1 1074 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 RBM38Q9H0Z9 239 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF696Q9H7X3 374 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 NDFIP2Q9NV92 336 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 RBM22Q9NW64 420 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TRPC5OSA6NMA1 111 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 ZNF839A8K0R7 811 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TREHO43280 583 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 SMIM10L2AP0DMW4 78 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 SMIM10L2BP0DMW5 78 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 WARSP23381 471 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 ATP5F1P24539 256 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 ADSLP30566 484 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 CD151P48509 253 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 STX5Q13190 355 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 IKBKEQ14164 716 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 UBXN11Q5T124 520 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 NEPROQ6NW34 567 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 TAC4Q86UU9 113 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 GPRC5AQ8NFJ5 357 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 VAT1Q99536 393 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 SPON1Q9HCB6 807 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 CACNA2D2Q9NY47 1150 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 GIMAP2Q9UG22 337 aa9.34□□□□□ -0.91
LIMCH1-215ENST00000512632 PTGESO14684 152 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 STRNO43815 780 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 CCDC166P0CW27 439 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ARCN1P48444 511 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 HERC3Q15034 1050 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 TBC1D25Q3MII6 688 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 DENND5AQ6IQ26 1287 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 PIWIL4Q7Z3Z4 852 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 LINC00523Q86TU6 105 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 RYBPQ8N488 228 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 FSD1LQ9BXM9 530 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 RHBDL2Q9NX52 303 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 MRASO14807 208 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 MOCS2O96007 188 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 CPB1P15086 417 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC7A2P52569 658 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 PRKAA2P54646 552 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 NR1H2P55055 460 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 FAM83EQ2M2I3 478 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 BTBD8Q5XKL5 378 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 FASTKD5Q7L8L6 764 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 TOP6BLQ8N6T0 577 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 PPHLN1Q8NEY8 458 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 NLGN2Q8NFZ4 835 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ASB9Q96DX5 294 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 OLFM1Q99784 485 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 MRPL57Q9BQC6 102 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 TSPYL2Q9H2G4 693 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 GLOD4Q9HC38 313 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 CNGB3Q9NQW8 809 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ARHGEF38Q9NXL2 777 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 NSMCE4AQ9NXX6 385 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SFMBT1Q9UHJ3 866 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SHROOM3Q8TF72 1996 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ARHGAP10A1A4S6 786 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 HEATR9A2RTY3 570 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SAC3D1A6NKF1 404 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SUPT7LO94864 414 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 TMCC1O94876 653 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 KCNE1P15382 129 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 UGT1A6P19224 532 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SCAPQ12770 1279 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 REP15Q6BDI9 236 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 CUZD1Q86UP6 607 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ATPAF2Q8N5M1 289 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SMG8Q8ND04 991 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 TRIM8Q9BZR9 551 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 UNC93B1Q9H1C4 597 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 AAR2Q9Y312 384 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 FAM149AA5PLN7 773 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 RRN3P2A6NIE6 340 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 AKAP10O43572 662 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 PFDN1O60925 122 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 COL6A2P12110 1019 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 HCAR3P49019 387 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 CSRP3P50461 194 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 RHDQ02161 417 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 FRG1Q14331 258 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ZBTB49Q6ZSB9 765 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 OR6P1Q8NGX9 317 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 DDI1Q8WTU0 396 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 ANKRD49Q8WVL7 239 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 CANT1Q8WVQ1 401 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SLCO4A1Q96BD0 722 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 GAD1Q99259 594 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC39A8Q9C0K1 460 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 KCNH4Q9UQ05 1017 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 AURKCQ9UQB9 309 aa9.33□□□□□ -0.92
LIMCH1-215ENST00000512632 DMTF1Q9Y222 760 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms