RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.45	□□□□□ -0.26
RNF4-215	ENST00000511843	IPO11	Q9UI26	975 aa	Known RBP	13.45	□□□□□ -0.26
RNF4-215	ENST00000511843	CHD8	Q9HCK8	2581 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	MAP1B	P46821	2468 aa	Known RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	SSU72P8	A0A1W2PR75	194 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	POM121B	A6NF01	834 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	AREL1	O15033	823 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	AP1G1	O43747	822 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	MMP20	O60882	483 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	ITGAV	P06756	1048 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	H2AFZ	P0C0S5	128 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	EPHA8	P29322	1005 aa	Predicted RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	GRK6	P43250	576 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	RPS21	P63220	83 aa	Known RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	RAD51	Q06609	339 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	IL10RB	Q08334	325 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	SLC10A7	Q0GE19	358 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	TBX2	Q13207	712 aa	Predicted RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	SUZ12	Q15022	739 aa	Known RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	TSR1	Q2NL82	804 aa	Known RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	ZNF542P	Q5EBM4	170 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	KIAA1161	Q6NSJ0	714 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	H2AFV	Q71UI9	128 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	PTAR1	Q7Z6K3	402 aa	Predicted RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	IQCH	Q86VS3	1027 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	SLC22A18AS	Q8N1D0	253 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	EID2	Q8N6I1	236 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	SAP25	Q8TEE9	199 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	TSC1	Q92574	1164 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	FEM1C	Q96JP0	617 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	CINP	Q9BW66	212 aa	Predicted RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	RBSN	Q9H1K0	784 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	TOR4A	Q9NXH8	423 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	DONSON	Q9NYP3	566 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	LRP4	O75096	1905 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	MYLK	Q15746	1914 aa		13.44	□□□□□ -0.26
RNF4-215	ENST00000511843	C1QTNF9B	B2RNN3	333 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	TSPAN6	O43657	245 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	MFSD11	O43934	449 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	DFNA5	O60443	496 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	PROSC	O94903	275 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	MAP3K6	O95382	1288 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	TMEM253	P0C7T8	217 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	C1QTNF9	P0C862	333 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	IL4R	P24394	825 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	ARRB1	P49407	418 aa	Predicted RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	ARSE	P51690	589 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	ZNF135	P52742	658 aa	Predicted RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	HNRNPD	Q14103	355 aa	Known RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	MESD	Q14696	234 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	HADH	Q16836	314 aa	Known RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	TPRG1L	Q5T0D9	272 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843		Q6ZSR6	202 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	ABI3BP	Q7Z7G0	1075 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	SRL	Q86TD4	932 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	PGBD5	Q8N414	524 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	LRRN4	Q8WUT4	740 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	RAB7B	Q96AH8	199 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	BMF	Q96LC9	184 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	CCDC42	Q96M95	316 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	KLF6	Q99612	283 aa	Predicted RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	C1QTNF2	Q9BXJ5	285 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	CPEB1	Q9BZB8	566 aa	Known RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	SUV39H2	Q9H5I1	410 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	UVRAG	Q9P2Y5	699 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	DKK3	Q9UBP4	350 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	COQ6	Q9Y2Z9	468 aa		13.43	□□□□□ -0.26
RNF4-215	ENST00000511843	TPR	P12270	2363 aa	Known RBP	13.43	□□□□□ -0.26
RNF4-215	ENST00000511843		A6NNZ2	444 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	MAFK	O60675	156 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	PEX11B	O96011	259 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	XPA	P23025	273 aa	Predicted RBP	13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	SCNN1B	P51168	640 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	SGCG	Q13326	291 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	DPYSL3	Q14195	570 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	LBR	Q14739	615 aa	Known RBP	13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	TMCO4	Q5TGY1	634 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	SARM1	Q6SZW1	724 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	KANSL1	Q7Z3B3	1105 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	RAB44	Q7Z6P3	723 aa	Predicted RBP	13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	GLRX5	Q86SX6	157 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	MARCH9	Q86YJ5	346 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	ATPAF2	Q8N5M1	289 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	LZTR1	Q8N653	840 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	PCDH19	Q8TAB3	1148 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	SLC35G2	Q8TBE7	412 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	ERVMER34-1	Q9H9K5	563 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	PCDH12	Q9NPG4	1184 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	UCKL1	Q9NWZ5	548 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	FTSJ1	Q9UET6	329 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	TFR2	Q9UP52	801 aa		13.42	□□□□□ -0.26
RNF4-215	ENST00000511843	ACACB	O00763	2458 aa		13.41	□□□□□ -0.26
RNF4-215	ENST00000511843	IGFALS	P35858	605 aa		13.41	□□□□□ -0.26
RNF4-215	ENST00000511843	RXRG	P48443	463 aa		13.41	□□□□□ -0.26
RNF4-215	ENST00000511843	CLDN6	P56747	220 aa		13.41	□□□□□ -0.26
RNF4-215	ENST00000511843	MAX	P61244	160 aa		13.41	□□□□□ -0.26
RNF4-215	ENST00000511843	OVGP1	Q12889	678 aa		13.41	□□□□□ -0.26
RNF4-215	ENST00000511843	DNAJC3	Q13217	504 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms