RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 EPAS1Q99814 870 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 AGPAT1Q99943 283 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 TTYH3Q9C0H2 523 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 ABCG4Q9H172 646 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 TCEAL2Q9H3H9 227 aaPredicted RBP11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 APOBEC3BQ9UH17 382 aaKnown RBP11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 FZD10Q9ULW2 581 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 ASXL3Q9C0F0 2248 aa11.69□□□□□ -0.54
HMGCS1-204ENST00000507293 RP1P56715 2156 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PTPRQQ9UMZ3 2332 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 CELSR3Q9NYQ7 3312 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 ANKRD62A6NC57 917 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 WASH4PA8MWX3 477 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 INSIG1O15503 277 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 USP12O75317 370 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 TM7SF2O76062 418 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PIGNO95427 931 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 YBEYP58557 167 aaPredicted RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 RPL7AP62424 266 aaKnown RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 UBXN1Q04323 297 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 SERINC3Q13530 473 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 C1orf61Q13536 156 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PTK2BQ14289 1009 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 NR0B2Q15466 257 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PARP15Q460N3 678 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 INO80DQ53TQ3 878 aaPredicted RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PPP1R15BQ5SWA1 713 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 CRTC1Q6UUV9 634 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 SASS6Q6UVJ0 657 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 SPACA3Q8IXA5 215 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PHACTR4Q8IZ21 702 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 TP53I13Q8NBR0 393 aaPredicted RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 BTN2A2Q8WVV5 523 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 FCRL3Q96P31 734 aaPredicted RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 ERGIC2Q96RQ1 377 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 IL12RB2Q99665 862 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 NCAPGQ9BPX3 1015 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 WRAP53Q9BUR4 548 aaKnown RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 C1QTNF7Q9BXJ2 289 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 CATSPERBQ9H7T0 1116 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 MBNL1Q9NR56 388 aaKnown RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 ANO10Q9NW15 660 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 SPASTQ9UBP0 616 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 LHX3Q9UBR4 397 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 SALL4Q9UJQ4 1053 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 PNMA8BQ9ULN7 279 aaPredicted RBP11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 KIF26BQ2KJY2 2108 aa11.68□□□□□ -0.54
HMGCS1-204ENST00000507293 TPP1O14773 563 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 GCATO75600 419 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 TIMP2P16035 220 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 TGM2P21980 687 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 XPAP23025 273 aaPredicted RBP11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 AIF1P55008 147 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 PCBP4P57723 403 aaKnown RBP11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 YPEL5P62699 121 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 OGDHQ02218 1023 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 TLE3Q04726 772 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 IRF4Q15306 451 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 CYTH1Q15438 398 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 STX1AQ16623 288 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 ISXQ2M1V0 245 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 KLHL40Q2TBA0 621 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 PRRT3Q5FWE3 981 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 DCUN1D2Q6PH85 259 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 MACC1Q6ZN28 852 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 UMODL1-AS1Q8N2C9 162 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 ZNF248Q8NDW4 579 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 NAF1Q96HR8 494 aaKnown RBP11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 ZNF578Q96N58 590 aaPredicted RBP11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 LGMNQ99538 433 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 CNPY3Q9BT09 278 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 LRRC61Q9BV99 259 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 POLR1BQ9H9Y6 1135 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 PDFQ9HBH1 243 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 GPATCH2LQ9NWQ4 482 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 NCKIPSDQ9NZQ3 722 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 DKK3Q9UBP4 350 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 UBA2Q9UBT2 640 aaPredicted RBP11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 COQ6Q9Y2Z9 468 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 MFHAS1Q9Y4C4 1052 aa11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 FASNP49327 2511 aaKnown RBP11.67□□□□□ -0.54
HMGCS1-204ENST00000507293 EME2A4GXA9 379 aaPredicted RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 MUSKO15146 869 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 ATXN7O15265 892 aaPredicted RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 FGF10O15520 208 aaPredicted RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 LZTS3O60299 673 aaPredicted RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 DXOO77932 396 aaKnown RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 PRB1P04280 392 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 ANXA6P08133 673 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 FERP16591 822 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 DESP17661 470 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 CDK11BP21127 795 aaKnown RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 EIF4A3P38919 411 aaKnown RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 LSSP48449 732 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 ADKP55263 362 aaKnown RBP11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 TPI1P60174 286 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 CXADRP78310 365 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 ELP6Q0PNE2 266 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 TMEM52BQ4KMG9 183 aa11.66□□□□□ -0.54
HMGCS1-204ENST00000507293 C3orf38Q5JPI3 329 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms