RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	ETNK1	Q9HBU6	452 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	PCDH9	Q9HC56	1237 aa		13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	PRMT8	Q9NR22	394 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN7-218	ENST00000496197	ZDBF2	Q9HCK1	2354 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	KPNA3	O00505	521 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	HTRA2	O43464	458 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	FZD6	O60353	706 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	PMPCB	O75439	489 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	STK10	O94804	968 aa	Known RBP	13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	PRKCG	P05129	697 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	ITIH2	P19823	946 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	SLC8A1	P32418	973 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	CXCL12	P48061	93 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	DR1	Q01658	176 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	PTK6	Q13882	451 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	SPARCL1	Q14515	664 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	ZNF776	Q68DI1	518 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	KCTD11	Q693B1	232 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	MAMSTR	Q6ZN01	415 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	RASSF3	Q86WH2	238 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	FRMD1	Q8N878	549 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	DTWD2	Q8NBA8	298 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	TMIE	Q8NEW7	156 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	TSTD1	Q8NFU3	115 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	ECHDC3	Q96DC8	303 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	TUBGCP5	Q96RT8	1024 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	TRIB3	Q96RU7	358 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	IER2	Q9BTL4	223 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	SUV39H2	Q9H5I1	410 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	POLM	Q9NP87	494 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	PAK5	Q9P286	719 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	CHKB	Q9Y259	395 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197	RAI2	Q9Y5P3	530 aa		13.62	□□□□□ -0.23
PTPN7-218	ENST00000496197		A0A0U1RQS6	177 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197		A0A1W2PP55	124 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	TCRBV7S3A2	A0A539	114 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	SPINT1	O43278	529 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	GPR37L1	O60883	481 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PAPSS2	O95340	614 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PRNP	P04156	253 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	SERPINF2	P08697	491 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	IVD	P26440	423 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CHRNA4	P43681	627 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CCR3	P51677	355 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	SEMG2	Q02383	582 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	LMNB2	Q03252	620 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	BCL2L1	Q07817	233 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CNTN1	Q12860	1018 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	GPS1	Q13098	491 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PARP6	Q2NL67	630 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	RALGPS1	Q5JS13	557 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ITPRIPL1	Q6GPH6	555 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	KIAA1324	Q6UXG2	1013 aa	Known RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	C1orf210	Q8IVY1	113 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	GRK7	Q8WTQ7	553 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	SIPA1	Q96FS4	1042 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	HINFP	Q9BQA5	517 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	FERMT1	Q9BQL6	677 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	LRRC1	Q9BTT6	524 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PABPC3	Q9H361	631 aa	Known RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ATP13A3	Q9H7F0	1226 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	RAB6B	Q9NRW1	208 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ZNF318	Q5VUA4	2279 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	TSPAN11	A1L157	253 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CTAGE15	A4D2H0	777 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PRR33	A8MZF0	331 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	USP12	O75317	370 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PGLS	O95336	258 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	AGT	P01019	485 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CTAGE8	P0CG41	777 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ITGB7	P26010	798 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	SERPINA4	P29622	427 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ADRA1A	P35348	466 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	P2RY2	P41231	377 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	GRIA1	P42261	906 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ABL2	P42684	1182 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	WNT3A	P56704	352 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	BASP1	P80723	227 aa	Known RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	RAD51	Q06609	339 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	SEMA5A	Q13591	1074 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	DHX34	Q14147	1143 aa	Known RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	GALNT3	Q14435	633 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ZNF805	Q5CZA5	627 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PIP5KL1	Q5T9C9	394 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	AGBL4	Q5VU57	503 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	ANKRD22	Q5VYY1	191 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CTAGE6	Q86UF2	777 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	CTAGE4	Q8IX94	777 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	MMGT1	Q8N4V1	131 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PDCD7	Q8N8D1	485 aa	Known RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	IPMK	Q8NFU5	416 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PIH1D2	Q8WWB5	315 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	RLN3	Q8WXF3	142 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	PRCC	Q92733	491 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	FAM131C	Q96AQ9	280 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	LRIG1	Q96JA1	1093 aa		13.61	□□□□□ -0.23
PTPN7-218	ENST00000496197	APOL2	Q9BQE5	337 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms