RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 GOLGA6L3A6NEY3 463 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 SGK1O00141 431 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 ZMPSTE24O75844 475 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 CD160O95971 181 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 MOCS2O96007 188 aaPredicted RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 ATP5BP06576 529 aaKnown RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 SRPRAP08240 638 aaKnown RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 KRT10P13645 584 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 DESP17661 470 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 NTSR1P30989 418 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 CD70P32970 193 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 CNR2P34972 360 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 MAGEA1P43355 309 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 MAP2K3P46734 347 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 IRAK1P51617 712 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 DGKEP52429 567 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 YBEYP58557 167 aaPredicted RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 SULT2A1Q06520 285 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 SLC20A2Q08357 652 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 ZNF177Q13360 481 aaPredicted RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 FUT11Q495W5 492 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 PITRM1Q5JRX3 1037 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 EOGTQ5NDL2 527 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 MBLAC2Q68D91 279 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 HEATR6Q6AI08 1181 aaKnown RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 MFN1Q8IWA4 741 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 LRRC8AQ8IWT6 810 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 TRIM42Q8IWZ5 723 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 CFAP52Q8N1V2 620 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 PYROXD2Q8N2H3 581 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 RPLP0P6Q8NHW5 317 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 PIP4K2CQ8TBX8 421 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 ZNF564Q8TBZ8 553 aaPredicted RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 FRS2Q8WU20 508 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 UCMAQ8WVF2 138 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 TTC9Q92623 222 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 FAF2Q96CS3 445 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 RPRD1AQ96P16 312 aaPredicted RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 PSMB7Q99436 277 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 SIK2Q9H0K1 926 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 MAGEH1Q9H213 219 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 NOL6Q9H6R4 1146 aaKnown RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 PRDM16Q9HAZ2 1276 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 OSGEPQ9NPF4 335 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 ABCB8Q9NUT2 735 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 DONSONQ9NYP3 566 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 UBP1Q9NZI7 540 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 RCOR3Q9P2K3 495 aaPredicted RBP6.89□□□□□ -1.31
VPS52-219ENST00000493379 MYO1AQ9UBC5 1043 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 ANAPC7Q9UJX3 599 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 VANGL2Q9ULK5 521 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 EFR3BQ9Y2G0 817 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 LRRK2Q5S007 2527 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 ITPR2Q14571 2701 aa6.89□□□□□ -1.31
VPS52-219ENST00000493379 SYNJ2BP-COX16A0A087WUM0 186 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ELOA3CA0A087WX78 387 aaPredicted RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 TARSL2A2RTX5 802 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 ELOA3DA6NLF2 546 aaPredicted RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 H0Y626 953 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 FGF10O15520 208 aaPredicted RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 PRPSAP2O60256 369 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 STK10O94804 968 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 IGLV3-19P01714 112 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ESRRAP11474 423 aaPredicted RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 TCF4P15884 667 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 NME2P22392 152 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ETFBP38117 255 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 KRT83P78385 493 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ECT2LQ008S8 904 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 SATB1Q01826 763 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 DPYSQ14117 519 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ZNF234Q14588 700 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 PDK2Q15119 407 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 SPA17Q15506 151 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 TAZQ16635 292 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 CA9Q16790 459 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 CDO1Q16878 200 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ELOA3BQ3SY89 546 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 EGFLAMQ63HQ2 1017 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 HIST2H2BCQ6DN03 193 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 TXNRD3NBQ6F5E7 133 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 CEP68Q76N32 757 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 WDR5BQ86VZ2 330 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 APCDD1Q8J025 514 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 RNF10Q8N5U6 811 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 LZTR1Q8N653 840 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 RTL3Q8N8U3 475 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 DCAF4L2Q8NA75 395 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 TXNDC5Q8NBS9 432 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 CCDC112Q8NEF3 446 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ELOA3Q8NG57 546 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 FAM131CQ96AQ9 280 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 VOPP1Q96AW1 172 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 TBC1D31Q96DN5 1066 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 ACOX2Q99424 681 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 SNRNP25Q9BV90 132 aaKnown RBP6.88□□□□□ -1.31
VPS52-219ENST00000493379 LACRTQ9GZZ8 138 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 LRRC19Q9H756 370 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 FBRSQ9HAH7 460 aa6.88□□□□□ -1.31
VPS52-219ENST00000493379 LUC7LQ9NQ29 371 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms