RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 RTP4Q96DX8 246 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 NSMCE3Q96MG7 304 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 RUNDC3BQ96NL0 473 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 HHIPQ96QV1 700 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 FAM129BQ96TA1 746 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 TRIM51Q9BSJ1 452 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 SLC25A51Q9H1U9 297 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 GBA3Q9H227 469 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 NCDNQ9UBB6 729 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 PCYOX1Q9UHG3 505 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 FBXO4Q9UKT5 387 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 PCDHGC4Q9Y5F7 938 aa17.39■□□□□ 0.37
LIME1-208ENST00000493265 MYO18AQ92614 2054 aaKnown RBP17.38■□□□□ 0.37
LIME1-208ENST00000493265 KPNA3O00505 521 aaPredicted RBP17.38■□□□□ 0.37
LIME1-208ENST00000493265 RNASEH1O60930 286 aaKnown RBP17.38■□□□□ 0.37
LIME1-208ENST00000493265 PMPCBO75439 489 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 MT-CYBP00156 380 aaPredicted RBP17.38■□□□□ 0.37
LIME1-208ENST00000493265 UGT2B4P06133 528 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 CTSLP07711 333 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 CR2P20023 1033 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 AP1S1P61966 158 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 SATB1Q01826 763 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 BCL2L1Q07817 233 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 GPS1Q13098 491 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 PRPSAP1Q14558 356 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 ZNF528Q3MIS6 628 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 NCEH1Q6PIU2 408 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 DSG4Q86SJ6 1040 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 SPEM1Q8N4L4 309 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 OR2T3Q8NH03 318 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 IMP4Q96G21 291 aaKnown RBP17.38■□□□□ 0.37
LIME1-208ENST00000493265 ATP13A3Q9H7F0 1226 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 PCDH9Q9HC56 1237 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 POLMQ9NP87 494 aaPredicted RBP17.38■□□□□ 0.37
LIME1-208ENST00000493265 RAB6BQ9NRW1 208 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 PAK5Q9P286 719 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 BCCIPQ9P287 314 aaKnown RBP eCLIP17.38■□□□□ 0.37
LIME1-208ENST00000493265 ASIC3Q9UHC3 531 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 SARDHQ9UL12 918 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 WASF2Q9Y6W5 498 aa17.38■□□□□ 0.37
LIME1-208ENST00000493265 RAD51CO43502 376 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 MMP2P08253 660 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 SERPINF2P08697 491 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 CSNK1DP48730 415 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 LMAN1P49257 510 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 DGKEP52429 567 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 METAP1P53582 386 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 COPAP53621 1224 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 BASP1P80723 227 aaKnown RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 SKOR1P84550 965 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 IHHQ14623 411 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 RSPO4Q2I0M5 234 aaPredicted RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 PARP6Q2NL67 630 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 CFAP58Q5T655 872 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 ZNF776Q68DI1 518 aaPredicted RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 TSSK4Q6SA08 328 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 KIAA1324Q6UXG2 1013 aaKnown RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 GDPD4Q6W3E5 623 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 PRPF39Q86UA1 669 aaKnown RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 JAMLQ86YT9 394 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 TMPRSS6Q8IU80 811 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 PLPP6Q8IY26 295 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 NOA1Q8NC60 698 aaKnown RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 LRRN4CLQ8ND94 238 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 TSTD1Q8NFU3 115 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 PIP4K2CQ8TBX8 421 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 GANCQ8TET4 914 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 OXNAD1Q96HP4 312 aaPredicted RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 KLHL32Q96NJ5 620 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 FCRL5Q96RD9 977 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 TRIM31Q9BZY9 425 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 MKRN2Q9H000 416 aaKnown RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 L2HGDHQ9H9P8 463 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 RRAGDQ9NQL2 400 aaPredicted RBP17.37■□□□□ 0.37
LIME1-208ENST00000493265 NCOR2Q9Y618 2525 aa17.37■□□□□ 0.37
LIME1-208ENST00000493265 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.36■□□□□ 0.37
LIME1-208ENST00000493265 E7EVH7 732 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 PLK4O00444 970 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 PRNPP04156 253 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 CES1P23141 567 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 SERPINA4P29622 427 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 ADCY8P40145 1251 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 MAPK8P45983 427 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 CXCL12P48061 93 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 PXNP49023 591 aaPredicted RBP17.36■□□□□ 0.37
LIME1-208ENST00000493265 RPS14P62263 151 aaKnown RBP17.36■□□□□ 0.37
LIME1-208ENST00000493265 TRAF2Q12933 501 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 DHX34Q14147 1143 aaKnown RBP17.36■□□□□ 0.37
LIME1-208ENST00000493265 SPARCL1Q14515 664 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 ALG1LQ6GMV1 187 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 ANO7Q6IWH7 933 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 C8orf74Q6P047 294 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 IPMKQ8NFU5 416 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 GORASP1Q9BQQ3 440 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 IER2Q9BTL4 223 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 MLPHQ9BV36 600 aaPredicted RBP17.36■□□□□ 0.37
LIME1-208ENST00000493265 RSPH9Q9H1X1 276 aaPredicted RBP17.36■□□□□ 0.37
LIME1-208ENST00000493265 ETNK1Q9HBU6 452 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 DLL3Q9NYJ7 618 aa17.36■□□□□ 0.37
LIME1-208ENST00000493265 FAM153AQ9UHL3 310 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms