RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	SNX18	Q96RF0	628 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RIT2	Q99578	217 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	APOL5	Q9BWW9	433 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GCOM2	Q9BZD3	368 aa	Predicted RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	POMK	Q9H5K3	350 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	STK39	Q9UEW8	545 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SNX14	Q9Y5W7	946 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C2orf16	Q68DN1	1984 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DOCK6	Q96HP0	2047 aa		4.39	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZNF292	O60281	2723 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	USP34	Q70CQ2	3546 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CFAP54	Q96N23	3096 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IGKV6-21	A0A0C4DH24	114 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	LY6G6E	A0A0G2JKS1	128 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	POC1B-GALNT4	F8VUJ3	575 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MSH4	O15457	936 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	EDIL3	O43854	480 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	STBD1	O95210	358 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GALT	P07902	379 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CTSA	P10619	480 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SP100	P23497	879 aa	Predicted RBP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PBX3	P40426	434 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NBL1	P41271	181 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	METAP2	P50579	478 aa	Known RBP eCLIP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	AKAP17A	Q02040	695 aa	Known RBP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRKCE	Q02156	737 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	E2F2	Q14209	437 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PGS1	Q32NB8	556 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	AWAT1	Q58HT5	328 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	XKR3	Q5GH77	459 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	BMP2KL	Q5H9B9	411 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	THEMIS2	Q5TEJ8	643 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	LAYN	Q6UX15	382 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZNF410	Q86VK4	478 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZDHHC17	Q8IUH5	632 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	VPS52	Q8N1B4	723 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	GALNT4	Q8N4A0	578 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NANOGP1	Q8N7R0	232 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TMEM105	Q8N8V8	129 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TDRD5	Q8NAT2	981 aa	Known RBP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CCDC148	Q8NFR7	591 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SLC22A17	Q8WUG5	538 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IGSF21	Q96ID5	467 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	VCPIP1	Q96JH7	1222 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CCDC136	Q96JN2	1154 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SCLT1	Q96NL6	688 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRR25	Q96S07	402 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SMAD5	Q99717	465 aa	Known RBP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MESP1	Q9BRJ9	268 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C22orf23	Q9BZE7	217 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZBP1	Q9H171	429 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SH3GLB2	Q9NR46	395 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TBC1D13	Q9NVG8	400 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PLEKHM1	Q9Y4G2	1056 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TDRD15	B5MCY1	1934 aa	Known RBP	4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CACNA1A	O00555	2505 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	NID2	Q14112	1375 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	OTOGL	Q3ZCN5	2332 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	FANCM	Q8IYD8	2048 aa		4.38	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CEP250	Q9BV73	2442 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	WDR87	Q6ZQQ6	2873 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CYP3A7-CYP3A51P	A0A087WV96	503 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941		A0A087WZ62	844 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CCDC187	A0A096LP49	1063 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRR23A	A6NEV1	266 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	AP4M1	O00189	453 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	INSIG1	O15503	277 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	ZC3H11A	O75152	810 aa	Known RBP eCLIP	4.37	□□□□□ -1.71	2e-6	■■■■□ 21.1
SNRNP40-205	ENST00000486941	CSDE1	O75534	798 aa	Known RBP	4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	OFD1	O75665	1012 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PSMD10	O75832	226 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	WEE2	P0C1S8	567 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	PRF1	P14222	555 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	EPCAM	P16422	314 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IFNAR1	P17181	557 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	AOC1	P19801	751 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CYP3A7	P24462	503 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	IL1R2	P27930	398 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CA8	P35219	290 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	VIPR2	P41587	438 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RECQL	P46063	649 aa	Predicted RBP	4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SLC11A2	P49281	568 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RAB27A	P51159	221 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	EVC	P57679	992 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	E2F1	Q01094	437 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RNASEL	Q05823	741 aa	Known RBP	4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	DRP2	Q13474	957 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TDG	Q13569	410 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RAPGEF1	Q13905	1077 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	SEC23B	Q15437	767 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	UGCG	Q16739	394 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	RARS2	Q5T160	578 aa	Known RBP	4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	TWF2	Q6IBS0	349 aa	Known RBP	4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	MOXD1	Q6UVY6	613 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	B3GNT9	Q6UX72	402 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	CYP26C1	Q6V0L0	522 aa		4.37	□□□□□ -1.71
SNRNP40-205	ENST00000486941	C15orf39	Q6ZRI6	1047 aa		4.37	□□□□□ -1.71

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