RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 AGBL3Q8NEM8 1001 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 UTP15Q8TED0 518 aaKnown RBP13.63□□□□□ -0.23
USP42-206ENST00000479544 OSCP1Q8WVF1 389 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 SENP6Q9GZR1 1112 aaPredicted RBP13.63□□□□□ -0.23
USP42-206ENST00000479544 ELP3Q9H9T3 547 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 TMPRSS4Q9NRS4 437 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 DNAJC28Q9NX36 388 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 KANSL3Q9P2N6 904 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 SH3BP1Q9Y3L3 701 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 MFHAS1Q9Y4C4 1052 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 A0A0J9YYE9 177 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 FCGR1AP12314 374 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 SLC2A4P14672 509 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 WNT7BP56706 349 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 PAGE2Q7Z2X7 111 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 SLC4A11Q8NBS3 891 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 FAM193BQ96PV7 902 aaPredicted RBP13.63□□□□□ -0.23
USP42-206ENST00000479544 ZNF670Q9BS34 389 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 SYT11Q9BT88 431 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 CCDC106Q9BWC9 280 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 ULBP1Q9BZM6 244 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 RIC8BQ9NVN3 520 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 DNAJB4Q9UDY4 337 aa13.63□□□□□ -0.23
USP42-206ENST00000479544 SBF2Q86WG5 1849 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 ZBTB24O43167 697 aaPredicted RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 TAF6P49848 677 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 KPNA1P52294 538 aaPredicted RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 FBXO47Q5MNV8 452 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 CUZD1Q86UP6 607 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 NT5DC4Q86YG4 428 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 AHI1Q8N157 1196 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 C1orf127Q8N9H9 656 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 ESAMQ96AP7 390 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 TAMM41Q96BW9 452 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 KLRG1Q96E93 195 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 PIWIL1Q96J94 861 aaKnown RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 SIRPGQ9P1W8 387 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 CDC14AQ9UNH5 594 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 TRAF6Q9Y4K3 522 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 CHD4Q14839 1912 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 TFECO14948 347 aaPredicted RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 ALOX15P16050 662 aaPredicted RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 RAB10P61026 200 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 TWF1Q12792 350 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 TAGAPQ8N103 731 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 TKTL2Q9H0I9 626 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 OAZ3Q9UMX2 235 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 PCDHGC3Q9UN70 934 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 MTF2Q9Y483 593 aaPredicted RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 KNL1Q8NG31 2342 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 SCN11AQ9UI33 1791 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 FAM20BO75063 409 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 RNASEH2AO75792 299 aaKnown RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 CCT8P50990 548 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 SIM2Q14190 667 aaPredicted RBP13.62□□□□□ -0.23
USP42-206ENST00000479544 METTL6Q8TCB7 284 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 EPB41L1Q9H4G0 881 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 IMPAD1Q9NX62 359 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 DTLQ9NZJ0 730 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 GIMAP2Q9UG22 337 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 OR12D3Q9UGF7 316 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 ZDHHC2Q9UIJ5 367 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 SNX10Q9Y5X0 201 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 DOT1LQ8TEK3 1739 aa13.62□□□□□ -0.23
USP42-206ENST00000479544 MATN2O00339 956 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 RAD51BO15315 384 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 ZBTB14O43829 449 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 MYL3P08590 195 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 MRPS5P82675 430 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 METTL21CQ5VZV1 264 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 ERI1Q8IV48 349 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 MRPL45Q9BRJ2 306 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 MORF4L1Q9UBU8 362 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 MT-CYBP00156 380 aaPredicted RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 CPB1P15086 417 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 PTPN1P18031 435 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 NMBRP28336 390 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 GEMP55040 296 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 C11orf91Q3C1V1 193 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 GALNT5Q7Z7M9 940 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 FAM83AQ86UY5 434 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 CAND1Q86VP6 1230 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 TTC30AQ86WT1 665 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 APOBEC3FQ8IUX4 373 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 SLC44A2Q8IWA5 706 aaPredicted RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 FBXO39Q8N4B4 442 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 CMASQ8NFW8 434 aaPredicted RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 FBXL20Q96IG2 436 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 IL22Q9GZX6 179 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 TBC1D13Q9NVG8 400 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 EXD2Q9NVH0 621 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 MAP3K20Q9NYL2 800 aaKnown RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 FARP1Q9Y4F1 1045 aaPredicted RBP13.61□□□□□ -0.23
USP42-206ENST00000479544 ST14Q9Y5Y6 855 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 CITO14578 2027 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 ATP8B3O60423 1300 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 H3BMM5 538 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 GSNP06396 782 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 TTKP33981 857 aa13.61□□□□□ -0.23
USP42-206ENST00000479544 RUNX1T1Q06455 604 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms