RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 SPATA9Q9BWV2 254 aa3.53□□□□□ -1.84
UBR3-208ENST00000474426 POLDIP3Q9BY77 421 aaKnown RBP3.53□□□□□ -1.84
UBR3-208ENST00000474426 BRF2Q9HAW0 419 aa3.53□□□□□ -1.84
UBR3-208ENST00000474426 RBM12Q9NTZ6 932 aaKnown RBP3.53□□□□□ -1.84
UBR3-208ENST00000474426 PLCXD1Q9NUJ7 323 aa3.53□□□□□ -1.84
UBR3-208ENST00000474426 THG1LQ9NWX6 298 aaKnown RBP3.53□□□□□ -1.84
UBR3-208ENST00000474426 MRPS7Q9Y2R9 242 aaKnown RBP3.53□□□□□ -1.84
UBR3-208ENST00000474426 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.53□□□□□ -1.84
UBR3-208ENST00000474426 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 SMIM30A4D0T7 59 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 OR14I1A6ND48 311 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 H7C1D1 291 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PPM1DO15297 605 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 DDAH1O94760 285 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 CNTN5O94779 1100 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 AKR7A3O95154 331 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 BAG3O95817 575 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 A1BGP04217 495 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 GNAI3P08754 354 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PKMP14618 531 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 TSHRP16473 764 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 TACR3P29371 465 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 CCND2P30279 289 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTR1BP42025 376 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 TXKP42681 527 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 CDC34P49427 236 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 TOB1P50616 345 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 EPHB4P54760 987 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 CLDN8P56748 225 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ANTXR2P58335 489 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTBP60709 375 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTA2P62736 377 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTG1P63261 375 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTG2P63267 376 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTC1P68032 377 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ACTA1P68133 377 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 GUCA2AQ02747 115 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 MAPK7Q13164 816 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PDK2Q15119 407 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 FAM189A2Q15884 450 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ETFDHQ16134 617 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 HES5Q5TA89 166 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PRAMEF20Q5VT98 475 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 LRRC8BQ6P9F7 803 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 C5orf46Q6UWT4 87 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 KIAA0408Q6ZU52 694 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 TBC1D10CQ8IV04 446 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ARID3BQ8IVW6 561 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 MRPS27Q92552 414 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 MARS2Q96GW9 593 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 RHOVQ96L33 236 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 BBS4Q96RK4 519 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 SMOQ99835 787 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 SPATA16Q9BXB7 569 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 TIGARQ9NQ88 270 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 CLEC5AQ9NY25 188 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 NOP53Q9NZM5 478 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 LRFN1Q9P244 771 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 VPS4AQ9UN37 437 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PLLPQ9Y342 182 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 RBMX2Q9Y388 322 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 NR2E1Q9Y466 385 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 TNPO3Q9Y5L0 923 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 WNK3Q9BYP7 1800 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PVALEFA0A1B0GWK0 134 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 SLC15A5A6NIM6 579 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 LGALS16A8MUM7 142 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 H3BNC9 293 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 HRKO00198 91 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ADAMTS3O15072 1205 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 EIF3HO15372 352 aaKnown RBP eCLIP3.52□□□□□ -1.85
UBR3-208ENST00000474426 PTCD1O75127 700 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 RSL1D1O76021 490 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 FGBP02675 491 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 F11P03951 625 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 SOD2P04179 222 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 UQCRFS1P1P0C7P4 283 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 SLC2A3P11169 496 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 RALBP11234 206 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PAFAH1B1P43034 410 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 IRAK1P51617 712 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 GNG2P59768 71 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ARF3P61204 181 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 ARF1P84077 181 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 MEF2AQ02078 507 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 CREMQ03060 361 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 FSTL1Q12841 308 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 NPRL3Q12980 569 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 PRKAA1Q13131 559 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 TGFBIQ15582 683 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 KCNMB1Q16558 191 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 HSDL1Q3SXM5 330 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 HSF5Q4G112 596 aaPredicted RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 BCL7AQ4VC05 210 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 ZNF311Q5JNZ3 666 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 UBXN11Q5T124 520 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 CXXC5Q7LFL8 322 aaKnown RBP3.52□□□□□ -1.85
UBR3-208ENST00000474426 TTC7BQ86TV6 843 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 HIPK1Q86Z02 1210 aa3.52□□□□□ -1.85
UBR3-208ENST00000474426 RTL3Q8N8U3 475 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms