RNA–Protein interactions for RNA: ENST00000474042.5

COPS7B-219, Transcript of COP9 signalosome subunit 7B, human

TSL 3

Gene COPS7B, Length 914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-219	ENST00000474042	TOR1B	O14657	336 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	GCAT	O75600	419 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	TCEA3	O75764	348 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	GPD1	P21695	349 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	RFC1	P35251	1148 aa	Predicted RBP	13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PDX1	P52945	283 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	UCN	P55089	124 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	TMPRSS3	P57727	454 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	POLR2F	P61218	127 aa	Known RBP	13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PTK2B	Q14289	1009 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	KRT31	Q15323	416 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	NR0B2	Q15466	257 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	LRRC73	Q5JTD7	316 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PERM1	Q5SV97	790 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	C6orf132	Q5T0Z8	1188 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PHLDB2	Q86SQ0	1253 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	VPS36	Q86VN1	386 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	SLC35F3	Q8IY50	421 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	C3orf20	Q8ND61	904 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	TPCN2	Q8NHX9	752 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	KCNE4	Q8WWG9	221 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PRR11	Q96HE9	360 aa	Predicted RBP	13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	NAF1	Q96HR8	494 aa	Known RBP	13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	VCPIP1	Q96JH7	1222 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PCDHB18P	Q96TA0	734 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	IL12RB2	Q99665	862 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	EPAS1	Q99814	870 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	C1QTNF7	Q9BXJ2	289 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	TTYH3	Q9C0H2	523 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	KLC2	Q9H0B6	622 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	CHMP5	Q9NZZ3	219 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	DKK3	Q9UBP4	350 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	LHX3	Q9UBR4	397 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	SATB2	Q9UPW6	733 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	SIK3	Q9Y2K2	1263 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	SSUH2	Q9Y2M2	353 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	MFHAS1	Q9Y4C4	1052 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	PCDHGA8	Q9Y5G5	932 aa		13.56	□□□□□ -0.24
COPS7B-219	ENST00000474042	TCRBV5S1A1T	A0A578	114 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	TSPAN11	A1L157	253 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	CPED1	A4D0V7	1026 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	WASH4P	A8MWX3	477 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	ERVH48-1	M5A8F1	160 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	BUB1	O43683	1085 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	TM7SF2	O76062	418 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	IGSF6	O95976	241 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	KRT3	P12035	628 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	THOP1	P52888	689 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	CLEC16A	Q2KHT3	1053 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	INO80D	Q53TQ3	878 aa	Predicted RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	PRRT3	Q5FWE3	981 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	C3orf38	Q5JPI3	329 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	BROX	Q5VW32	411 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	RBM44	Q6ZP01	1051 aa	Known RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	MON1B	Q7L1V2	547 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	PHF13	Q86YI8	300 aa	Predicted RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	PYROXD2	Q8N2H3	581 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	ZNF843	Q8N446	348 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	ENOX1	Q8TC92	643 aa	Known RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	SNRNP27	Q8WVK2	155 aa	Known RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	NAT6	Q93015	286 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	HMCES	Q96FZ2	354 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	ATXN7L3B	Q96GX2	97 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	DPH1	Q9BZG8	443 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	CLPB	Q9H078	707 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	VPS16	Q9H269	839 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	NLRC4	Q9NPP4	1024 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	MBNL1	Q9NR56	388 aa	Known RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	ATM	Q13315	3056 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	COL6A6	A6NMZ7	2263 aa		13.55	□□□□□ -0.24
COPS7B-219	ENST00000474042	SCN8A	Q9UQD0	1980 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	CDRT15L2	A8MXV6	281 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	MUSK	O15146	869 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	CCP110	O43303	1012 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	MMP20	O60882	483 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	CALB1	P05937	261 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	TIMP2	P16035	220 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	EPHB2	P29323	1055 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	STAT1	P42224	750 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	NSF	P46459	744 aa	Known RBP	13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	RPIA	P49247	311 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	SUOX	P51687	545 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	YBEY	P58557	167 aa	Predicted RBP	13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	RHOA	P61586	193 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	RHD	Q02161	417 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	RAD51	Q06609	339 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	SERINC3	Q13530	473 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	IRF4	Q15306	451 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	PARP15	Q460N3	678 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	TMEM52B	Q4KMG9	183 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	WDR59	Q6PJI9	974 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	SLFN11	Q7Z7L1	901 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	TTC7B	Q86TV6	843 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	WDR48	Q8TAF3	677 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	CXorf40A	Q8TE69	158 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	GLMN	Q92990	594 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	SELENOO	Q9BVL4	669 aa		13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	CPEB1	Q9BZB8	566 aa	Known RBP	13.54	□□□□□ -0.24
COPS7B-219	ENST00000474042	SLC13A1	Q9BZW2	595 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms