RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 SLC30A5Q8TAD4 765 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 CCDC97Q96F63 343 aaPredicted RBP13.72□□□□□ -0.21
CHD3-209ENST00000473376 ZNF641Q96N77 438 aaPredicted RBP13.72□□□□□ -0.21
CHD3-209ENST00000473376 TUBGCP5Q96RT8 1024 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 IL12RB2Q99665 862 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 EPAS1Q99814 870 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 CNPY3Q9BT09 278 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 VPS16Q9H269 839 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 THSD1Q9NS62 852 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 FAM207AQ9NSI2 230 aaPredicted RBP13.72□□□□□ -0.21
CHD3-209ENST00000473376 LIMA1Q9UHB6 759 aaKnown RBP13.72□□□□□ -0.21
CHD3-209ENST00000473376 MYO6Q9UM54 1294 aa13.72□□□□□ -0.21
CHD3-209ENST00000473376 LGALS16A8MUM7 142 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 SPINT1O43278 529 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 BUB1O43683 1085 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 TMCC1O94876 653 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 UGT2B4P06133 528 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 CSNK1DP48730 415 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 ZNF135P52742 658 aaPredicted RBP13.71□□□□□ -0.21
CHD3-209ENST00000473376 NDST2P52849 883 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 C19orf57Q0VDD7 668 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 EIF2B5Q13144 721 aaKnown RBP13.71□□□□□ -0.21
CHD3-209ENST00000473376 SERINC3Q13530 473 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 NR0B2Q15466 257 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 ISXQ2M1V0 245 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 PPP1R15BQ5SWA1 713 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 BRAT1Q6PJG6 821 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 KDM7AQ6ZMT4 941 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 MON1BQ7L1V2 547 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 TMC6Q7Z403 805 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 DNAAF5Q86Y56 855 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 SPACA3Q8IXA5 215 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 RYBPQ8N488 228 aaPredicted RBP13.71□□□□□ -0.21
CHD3-209ENST00000473376 CCDC185Q8N715 623 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 NEK11Q8NG66 645 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 OR6C4Q8NGE1 309 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 ATL2Q8NHH9 583 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 IFI44Q8TCB0 444 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 MAPK15Q8TD08 544 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 CXorf40AQ8TE69 158 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 KLHL32Q96NJ5 620 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 PCDHB18PQ96TA0 734 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 SLC13A1Q9BZW2 595 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 NOL6Q9H6R4 1146 aaKnown RBP13.71□□□□□ -0.21
CHD3-209ENST00000473376 KLF15Q9UIH9 416 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 DOCK9Q9BZ29 2069 aa13.71□□□□□ -0.21
CHD3-209ENST00000473376 TMX2-CTNND1H3BSU7 103 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 USP12O75317 370 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 CSO75390 466 aaKnown RBP13.7□□□□□ -0.22
CHD3-209ENST00000473376 SKOR1P84550 965 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 C6orf132Q5T0Z8 1188 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 BROXQ5VW32 411 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 PSTKQ8IV42 348 aaKnown RBP13.7□□□□□ -0.22
CHD3-209ENST00000473376 TP53I13Q8NBR0 393 aaPredicted RBP13.7□□□□□ -0.22
CHD3-209ENST00000473376 SCG3Q8WXD2 468 aaKnown RBP13.7□□□□□ -0.22
CHD3-209ENST00000473376 SLC39A7Q92504 469 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 SPOCK2Q92563 424 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 FCRL3Q96P31 734 aaPredicted RBP13.7□□□□□ -0.22
CHD3-209ENST00000473376 NLRC4Q9NPP4 1024 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 LMBRD1Q9NUN5 540 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 ANO10Q9NW15 660 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 FANCLQ9NW38 375 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 APOBEC3BQ9UH17 382 aaKnown RBP13.7□□□□□ -0.22
CHD3-209ENST00000473376 FZD10Q9ULW2 581 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 BPTFQ12830 3046 aa13.7□□□□□ -0.22
CHD3-209ENST00000473376 PTPRQQ9UMZ3 2332 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 MYLKQ15746 1914 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RASA4BC9J798 803 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 ERVH48-1M5A8F1 160 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 EPHB6O15197 1021 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RASA4O43374 803 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 ALPIP09923 528 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 TIMP2P16035 220 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 FERP16591 822 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 HTR1BP28222 390 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 EIF4A3P38919 411 aaKnown RBP13.69□□□□□ -0.22
CHD3-209ENST00000473376 COPB1P53618 953 aaKnown RBP13.69□□□□□ -0.22
CHD3-209ENST00000473376 TMPRSS3P57727 454 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RHOAP61586 193 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 GABREP78334 506 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 MYL5Q02045 173 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RHDQ02161 417 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 PPARDQ03181 441 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 NSUN2Q08J23 767 aaKnown RBP eCLIP13.69□□□□□ -0.22
CHD3-209ENST00000473376 ELOCQ15369 112 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 UGP2Q16851 508 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RAB6CQ53S08 254 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 ZNF542PQ5EBM4 170 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 ESRP1Q6NXG1 681 aaKnown RBP13.69□□□□□ -0.22
CHD3-209ENST00000473376 DNAJC24Q6P3W2 148 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RBM44Q6ZP01 1051 aaKnown RBP13.69□□□□□ -0.22
CHD3-209ENST00000473376 PHACTR4Q8IZ21 702 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 SLC46A1Q96NT5 459 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 LGMNQ99538 433 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 AGPAT1Q99943 283 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 NCAPGQ9BPX3 1015 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 RAB6CQ9H0N0 254 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 SUV39H2Q9H5I1 410 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 LRRC19Q9H756 370 aa13.69□□□□□ -0.22
CHD3-209ENST00000473376 ASCL3Q9NQ33 180 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms