RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NCKIPSDQ9NZQ3 722 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 PTGDR2Q9Y5Y4 395 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 ARVCFO00192 962 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 STX7O15400 261 aaKnown RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 MAFKO60675 156 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 TBL1XO60907 577 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 SERPINF2P08697 491 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 ETV4P43268 484 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 PCLAFQ15004 111 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 CYP2R1Q6VVX0 501 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 MOCS1Q9NZB8 636 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 PCDHB8Q9UN66 801 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 FAM155AB1AL88 458 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 K7ERQ8 282 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 MATN3O15232 486 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 TACR2P21452 398 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 COPAP53621 1224 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 LIMK2P53671 638 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 RHOAP61586 193 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC18A2Q05940 514 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 GALNT2Q10471 571 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 SCUBE1Q8IWY4 988 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 MAPK15Q8TD08 544 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 MZB1Q8WU39 189 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 CORO1BQ9BR76 489 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 IGSF9Q9P2J2 1179 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 TIMM22Q9Y584 194 aa13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 ZNF646O15015 1829 aaPredicted RBP13.86□□□□□ -0.19
CCDC88A-211ENST00000471947 PTPRFP10586 1907 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 GSC2O15499 205 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 GALTP07902 379 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 RAG1P15918 1043 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 NPY2RP49146 381 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 VEGFBP49765 207 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 CDKN1CP49918 316 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ECT2LQ008S8 904 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 BTKQ06187 659 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 CBX2Q14781 532 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ACAD11Q709F0 780 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 GLT6D1Q7Z4J2 308 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 EGFL8Q99944 293 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 PRKAG3Q9UGI9 489 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ZCWPW2A0A1B0GU75 182 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 A0A1W2PQ67 120 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 C1RP00736 705 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ALPIP09923 528 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 FUT11Q495W5 492 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 GALNTL6Q49A17 601 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 SEL1L3Q68CR1 1132 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 C4orf22Q6V702 233 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 DET1Q7L5Y6 550 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ARHGAP12Q8IWW6 846 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 COLGALT2Q8IYK4 626 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 GRIN3AQ8TCU5 1115 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC7A6OSQ96CW6 309 aaPredicted RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 NPAS2Q99743 824 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 SCUBE2Q9NQ36 999 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 LATS2Q9NRM7 1088 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 SSX2IPQ9Y2D8 614 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 Q9Y3F1 56 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ARID2Q68CP9 1835 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 TYW5A2RUC4 315 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ZNF623O75123 536 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 GLP2RO95838 553 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 JUNP05412 331 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 LBRQ14739 615 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 NTAN1Q96AB6 310 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 ASIC4Q96FT7 647 aa13.85□□□□□ -0.19
CCDC88A-211ENST00000471947 CES1P23141 567 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 GABRR2P28476 465 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 TSNAXIP1Q2TAA8 658 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 MAP3K21Q5TCX8 1036 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 TRPC4APQ8TEL6 797 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 FAXDC2Q96IV6 333 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 EMCNQ9ULC0 261 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 ATG2BQ96BY7 2078 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SIN3BO75182 1162 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 BMP1P13497 986 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 GM2AP17900 193 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 CALB2P22676 271 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 AGKQ53H12 422 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 HECTD3Q5T447 861 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 CCDC97Q96F63 343 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 LENG8Q96PV6 779 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC22A12Q96S37 553 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 C11orf84Q9BUA3 381 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 UBA2Q9UBT2 640 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC38A8A6NNN8 435 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 PPP6CO00743 305 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 ZBTB14O43829 449 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 FKTNO75072 461 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 URODP06132 367 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC2A3P11169 496 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 FGF3P11487 239 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 CDK18Q07002 472 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 TRIP10Q15642 601 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 RBBP7Q16576 425 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 PTPRNQ16849 979 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms