RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 CCDC3Q9BQI4 270 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 LRRC61Q9BV99 259 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 MAGEH1Q9H213 219 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 VPS16Q9H269 839 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 GANQ9H2C0 597 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 SYNDIG1Q9H7V2 258 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 USP29Q9HBJ7 922 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 NLRC4Q9NPP4 1024 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 WDR70Q9NW82 654 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 SPASTQ9UBP0 616 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 GULP1Q9UBP9 304 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 RABGEF1Q9UJ41 708 aa12.43□□□□□ -0.42
HDAC3-204ENST00000469207 SETXQ7Z333 2677 aaKnown RBP12.43□□□□□ -0.42
HDAC3-204ENST00000469207 ERVH48-1M5A8F1 160 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TPP1O14773 563 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 RAMP2O60895 175 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TM7SF2O76062 418 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TMCC1O94876 653 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 LSM8O95777 96 aaKnown RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 PRKCGP05129 697 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 RBMS1P29558 406 aaKnown RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 RFC1P35251 1148 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 MAPKAPK2P49137 400 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 CDR2Q01850 454 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 NRG1Q02297 640 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 CYTH1Q15438 398 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 ARL13BQ3SXY8 428 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TCP11X2Q5H9J9 407 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 WDR59Q6PJI9 974 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 RBM44Q6ZP01 1051 aaKnown RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 ARCQ7LC44 396 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 RD3Q7Z3Z2 195 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 FAM114A1Q8IWE2 563 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 SFTPA2Q8IWL1 248 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 FAM172AQ8WUF8 416 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 ASB12Q8WXK4 309 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TTC9Q92623 222 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 CENPIQ92674 756 aaPredicted RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 FUBP1Q96AE4 644 aaKnown RBP12.42□□□□□ -0.42
HDAC3-204ENST00000469207 RAB7BQ96AH8 199 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TBC1D31Q96DN5 1066 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 EPAS1Q99814 870 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 TTYH3Q9C0H2 523 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 CLSTN2Q9H4D0 955 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 THSD1Q9NS62 852 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 SIRPGQ9P1W8 387 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 PADI4Q9UM07 663 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 HPCAL4Q9UM19 191 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 CFAP46Q8IYW2 2715 aa12.42□□□□□ -0.42
HDAC3-204ENST00000469207 LMO7DNF2Z398 122 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 EFSO43281 561 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 TNFSF15O95150 251 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 PIGNO95427 931 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 ANXA6P08133 673 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 UNGP13051 313 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-204ENST00000469207 ERCC5P28715 1186 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-204ENST00000469207 POLR2FP61218 127 aaKnown RBP12.41□□□□□ -0.42
HDAC3-204ENST00000469207 VAC14Q08AM6 782 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 SRSF6Q13247 344 aaKnown RBP12.41□□□□□ -0.42
HDAC3-204ENST00000469207 PTK2BQ14289 1009 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 IRF4Q15306 451 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 C6orf132Q5T0Z8 1188 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 SMYD5Q6GMV2 418 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 SCYL2Q6P3W7 929 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 B3GNT8Q7Z7M8 397 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 HID1Q8IV36 788 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 MSANTD4Q8NCY6 345 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 CXorf40AQ8TE69 158 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 BTN2A2Q8WVV5 523 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 HMCESQ96FZ2 354 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 DPH1Q9BZG8 443 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 FOXP3Q9BZS1 431 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 SLC13A1Q9BZW2 595 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 FAM207AQ9NSI2 230 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-204ENST00000469207 EVA1BQ9NVM1 165 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 SSUH2Q9Y2M2 353 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 CHD5Q8TDI0 1954 aa12.41□□□□□ -0.42
HDAC3-204ENST00000469207 CDRT15L2A8MXV6 281 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 CREB3O43889 395 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 LZTS3O60299 673 aaPredicted RBP12.4□□□□□ -0.42
HDAC3-204ENST00000469207 BUB1BO60566 1050 aaPredicted RBP12.4□□□□□ -0.42
HDAC3-204ENST00000469207 KRT3P12035 628 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 HGFP14210 728 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 SOX5P35711 763 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 PTPN9P43378 593 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 RHOAP61586 193 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 YPEL5P62699 121 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 CCL7P80098 99 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 SKOR1P84550 965 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 RHDQ02161 417 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 PPARDQ03181 441 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 WSCD2Q2TBF2 565 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 ZSCAN23Q3MJ62 389 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 ENPP7Q6UWV6 458 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 STRADAQ7RTN6 431 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 SLFN11Q7Z7L1 901 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 DENND6BQ8NEG7 585 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 OSBPL1AQ9BXW6 950 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 LHX3Q9UBR4 397 aa12.4□□□□□ -0.42
HDAC3-204ENST00000469207 OR1A2Q9Y585 309 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms