RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 TMPRSS6Q8IU80 811 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 GSTCDQ8NEC7 633 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ST13P5Q8NFI4 369 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 TIMMDC1Q9NPL8 285 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 MIOSQ9NXC5 875 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 SCN3BQ9NY72 215 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 RSL24D1Q9UHA3 163 aaKnown RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 PHTF1Q9UMS5 762 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 TSPAN9O75954 239 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 CCDC166P0CW27 439 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 FSHRP23945 695 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ATXN3P54252 364 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 ARPC4P59998 168 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 TWF1Q12792 350 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 EIF2B5Q13144 721 aaKnown RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 KCNJ11Q14654 390 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 PM20D1Q6GTS8 502 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 TRNP1Q6NT89 227 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ZFP1Q6P2D0 407 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 NPNTQ6UXI9 565 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 MARK2Q7KZI7 788 aaKnown RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 LUZP2Q86TE4 346 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 CCDC103Q8IW40 242 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 PIWIL1Q96J94 861 aaKnown RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 OSBPL2Q9H1P3 480 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ATP13A1Q9HD20 1204 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 KIAA1522Q9P206 1035 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 DEC1Q9P2X7 70 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ZC3H7BQ9UGR2 993 aaKnown RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 NME7Q9Y5B8 376 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ZFP37Q9Y6Q3 630 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 TRIP12Q14669 1992 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 LZTS3O60299 673 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 ASLP04424 464 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 GSNP06396 782 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ATXN8OSP0DMR3 200 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 AMPD1P23109 780 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 MTTPP55157 894 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 GAD2Q05329 585 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 KIF19Q2TAC6 998 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 CCDC153Q494R4 210 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 TNFAIP8L3Q5GJ75 292 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 LGI2Q8N0V4 545 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 TMEM130Q8N3G9 435 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 CCDC185Q8N715 623 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 ZNF461Q8TAF7 563 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 CLEC4CQ8WTT0 213 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 OSCP1Q8WVF1 389 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 POF1BQ8WVV4 589 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 TSPAN17Q96FV3 270 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 MRPS26Q9BYN8 205 aaKnown RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 GPR63Q9BZJ6 419 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 MANSC1Q9H8J5 431 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 PAK6Q9NQU5 681 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 ARHGEF4Q9NR80 690 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 SAE1Q9UBE0 346 aaPredicted RBP7.74□□□□□ -1.17
USP54-210ENST00000466048 WDR37Q9Y2I8 494 aa7.74□□□□□ -1.17
USP54-210ENST00000466048 C2orf81A6NN90 581 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 FAM25AB3EWG3 89 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 FAM25CB3EWG5 89 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 FAM25GB3EWG6 89 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 MAGEC1O60732 1142 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 CLDN11O75508 207 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 APRTP07741 180 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 GALTP07902 379 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 TARSP26639 723 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 CLK1P49759 484 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 SNRPD1P62314 119 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 LRRC32Q14392 662 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 KBTBD12Q3ZCT8 623 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 CYP4V2Q6ZWL3 525 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 VPS50Q96JG6 964 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 BTN2A3PQ96KV6 586 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 C8orf48Q96LL4 319 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 PRR23AA6NEV1 266 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 OAZ2O95190 189 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SERPINF2P08697 491 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 GOT1P17174 413 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 RPL5P46777 297 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 SLC11A1P49279 550 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 CXCR3P49682 368 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SEMA5AQ13591 1074 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 C16orf72Q14CZ0 275 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 CA9Q16790 459 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 FNDC3BQ53EP0 1204 aaKnown RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 HP1BP3Q5SSJ5 553 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 MARC1Q5VT66 337 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 ARMC3Q5W041 872 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 LRRC8EQ6NSJ5 796 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 PAQR9Q6ZVX9 377 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 GET4Q7L5D6 327 aaPredicted RBP7.73□□□□□ -1.17
USP54-210ENST00000466048 ANKMY2Q8IV38 441 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 PPM1NQ8N819 430 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 SNX19Q92543 992 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 NDNQ99608 321 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 LPIN3Q9BQK8 851 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 RETREG1Q9H6L5 497 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 USP29Q9HBJ7 922 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 LRRC4CQ9HCJ2 640 aa7.73□□□□□ -1.17
USP54-210ENST00000466048 HMG20AQ9NP66 347 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms