RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ARHGAP12Q8IWW6 846 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 RCOR2Q8IZ40 523 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 GALNT15Q8N3T1 639 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 NPWQ8N729 165 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 LRRC57Q8N9N7 239 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-205ENST00000465238 OR8D1Q8WZ84 308 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 FAM131CQ96AQ9 280 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 FAF2Q96CS3 445 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 CCDC114Q96M63 670 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 ZNF830Q96NB3 372 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-205ENST00000465238 RNF157Q96PX1 679 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 KDM4CQ9H3R0 1056 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 AMFRQ9UKV5 643 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 MFHAS1Q9Y4C4 1052 aa17.99■□□□□ 0.47
COL7A1-205ENST00000465238 FARP1Q9Y4F1 1045 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-205ENST00000465238 COL5A1P20908 1838 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 LAMA5O15230 3695 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 KNTC1P50748 2209 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3DA0A087WVF3 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3IA0A087WXS9 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3EA0A087X179 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3KA0A087X1G2 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 A0A1W2PR77 199 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3FA6NER0 549 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 GOLGA8CPA6NN73 597 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 ZNF487B1APH4 448 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3LB9A6J9 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 ALOX15BO15296 676 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 YKT6O15498 198 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 SLC7A4O43246 635 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 SMAD6O43541 496 aaKnown RBP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 LATO43561 262 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 BNIP3LO60238 219 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 ZRANB2O95218 330 aaKnown RBP eCLIP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 WNT1P04628 370 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3HP0C7X1 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 RECQLP46063 649 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 IL9RQ01113 521 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3GQ6DHY5 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3CQ6IPX1 549 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 ZNF662Q6ZS27 426 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 KATNAL2Q8IYT4 538 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 TBC1D3Q8IZP1 549 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-205ENST00000465238 NETO2Q8NC67 525 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 CASKIN2Q8WXE0 1202 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 SERAC1Q96JX3 654 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 CEP44Q9C0F1 390 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 SP110Q9HB58 689 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 LZTFL1Q9NQ48 299 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 GDF3Q9NR23 364 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 FTSJ1Q9UET6 329 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 PPP2R2CQ9Y2T4 447 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 PCDHA3Q9Y5H8 950 aa17.98■□□□□ 0.47
COL7A1-205ENST00000465238 ATRXP46100 2492 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 CCDC66A2RUB6 948 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 C3orf70A6NLC5 250 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 CTNNA2P26232 953 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 CTNNA1P35221 906 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 NUDT1P36639 197 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 DNA2P51530 1060 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 CCDC173Q0VFZ6 552 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 PAFAH1B3Q15102 231 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 C22orf39Q6P5X5 142 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 MFSD7Q6UXD7 560 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 Q6ZVU0 165 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 PRPF39Q86UA1 669 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 NT5DC3Q86UY8 548 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 RFX6Q8HWS3 928 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 CCDC50Q8IVM0 306 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 PCDH20Q8N6Y1 951 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 PQLC3Q8N755 202 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 EXD1Q8NHP7 514 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 KRT35Q92764 455 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 RBM41Q96IZ5 413 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 UBA2Q9UBT2 640 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 IPO11Q9UI26 975 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 LHX6Q9UPM6 363 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 FCF1Q9Y324 198 aaKnown RBP17.97■□□□□ 0.47
COL7A1-205ENST00000465238 ACTL7AQ9Y615 435 aa17.97■□□□□ 0.47
COL7A1-205ENST00000465238 C1QTNF3-AMACRE9PGA6 284 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 J3KR12 359 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 TLR4O00206 839 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 APOL1O14791 398 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 WNT9AO14904 365 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 MCF2LO15068 1137 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 PLRG1O43660 514 aaKnown RBP17.96■□□□□ 0.47
COL7A1-205ENST00000465238 PRAMEF11O60813 436 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 CD160O95971 181 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 ITGAVP06756 1048 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 ZFXP17010 805 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-205ENST00000465238 MARCKSL1P49006 195 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 ARRB1P49407 418 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-205ENST00000465238 RWDD2BP57060 319 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 PPP2CBP62714 309 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 PPP2CAP67775 309 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 IL10RBQ08334 325 aa17.96■□□□□ 0.47
COL7A1-205ENST00000465238 INO80DQ53TQ3 878 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-205ENST00000465238 PRAMEF14Q5SWL7 426 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms