RNA–Protein interactions for RNA: ENST00000459783.5

MRPL55-223, Transcript of mitochondrial ribosomal protein L55, human

TSL 5 BASIC

Gene MRPL55, Length 694 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-223	ENST00000459783	OTUD4	Q01804	1114 aa	Known RBP	10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	SEMG2	Q02383	582 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	NOMO1	Q15155	1222 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	TMEM259	Q4ZIN3	620 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	RIF1	Q5UIP0	2472 aa	Known RBP	10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	SEL1L3	Q68CR1	1132 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	LAYN	Q6UX15	382 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	KDM7A	Q6ZMT4	941 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	ACTL9	Q8TC94	416 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	QKI	Q96PU8	341 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	SEMA3C	Q99985	751 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	PCED1A	Q9H1Q7	454 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	SUV39H2	Q9H5I1	410 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	SEMA4G	Q9NTN9	838 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	RBM22	Q9NW64	420 aa	Known RBP eCLIP	10.37	□□□□□ -0.75	8e-13	■■■□□ 15.5
MRPL55-223	ENST00000459783	TRMT1	Q9NXH9	659 aa	Known RBP	10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	DKK3	Q9UBP4	350 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	GMEB2	Q9UKD1	530 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	EFR3B	Q9Y2G0	817 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	PCDHGC4	Q9Y5F7	938 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	PCDHGA5	Q9Y5G8	931 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	THADA	Q6YHU6	1953 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	SPAG17	Q6Q759	2223 aa		10.37	□□□□□ -0.75
MRPL55-223	ENST00000459783	MEI4	A8MW99	385 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	APOC4-APOC2	K7ER74	178 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	HTRA2	O43464	458 aa	Predicted RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	RNGTT	O60942	597 aa	Known RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	PRL	P01236	227 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	APOC2	P02655	101 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	WNT1	P04628	370 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZNF806	P0C7X5	589 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	MAT2A	P31153	395 aa	Known RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	CD68	P34810	354 aa	Predicted RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	HSPA9	P38646	679 aa	Known RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	CCR5	P51681	352 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	AP1S1	P61966	158 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	IRX4	P78413	519 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	AP1B1	Q10567	949 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	RALGDS	Q12967	914 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	PDK1	Q15118	436 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	SIX1	Q15475	284 aa	Predicted RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	CSRP2	Q16527	193 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZNF284	Q2VY69	593 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	ODF2	Q5BJF6	829 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	TIGD7	Q6NT04	549 aa	Predicted RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	PRPF39	Q86UA1	669 aa	Known RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZC3H18	Q86VM9	953 aa	Known RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	TRIM69	Q86WT6	500 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	SYT12	Q8IV01	421 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	ZCCHC9	Q8N567	271 aa	Known RBP	10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	KLK6	Q92876	244 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	FOXJ1	Q92949	421 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	PPP1R16A	Q96I34	528 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	TUBGCP5	Q96RT8	1024 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	OSBPL1A	Q9BXW6	950 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	CAPN10	Q9HC96	672 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	CA5B	Q9Y2D0	317 aa		10.36	□□□□□ -0.75
MRPL55-223	ENST00000459783	FAM186A	A6NE01	2351 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3D	A0A087WVF3	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3I	A0A087WXS9	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3E	A0A087X179	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3K	A0A087X1G2	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783		A0A0U1RQS6	177 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783		A0A1W2PPC4	97 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783		A0A1W2PQU0	124 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	LNP1	A1A4G5	178 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3F	A6NER0	549 aa	Predicted RBP	10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	LRRC72	A6NJI9	287 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	UPK3BL1	B0FP48	263 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3L	B9A6J9	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	UPK3BL2	E5RIL1	263 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PPP1R12A	O14974	1030 aa	Predicted RBP	10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	FANCG	O15287	622 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	RAD51B	O15315	384 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	AP1G1	O43747	822 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	FZD6	O60353	706 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	GDF9	O60383	454 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PDHA1	P08559	390 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3H	P0C7X1	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PRLR	P16471	622 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	GM2A	P17900	193 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	CD27	P26842	260 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	NR2C2	P49116	596 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	RENBP	P51606	427 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	SKOR1	P84550	965 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	RAD51	Q06609	339 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	CCDC173	Q0VFZ6	552 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	UGP2	Q16851	508 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3G	Q6DHY5	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3C	Q6IPX1	549 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	FBXL19	Q6PCT2	694 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	PRR23C	Q6ZRP0	262 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	KIAA2013	Q8IYS2	634 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TBC1D3	Q8IZP1	549 aa	Predicted RBP	10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	UBL4B	Q8N7F7	174 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	OR2I1P	Q8NGU4	316 aa		10.35	□□□□□ -0.75
MRPL55-223	ENST00000459783	TFB1M	Q8WVM0	346 aa	Known RBP	10.35	□□□□□ -0.75

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