RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ZNF641Q96N77 438 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-203ENST00000459756 ZNF599Q96NL3 588 aa16.31■□□□□ 0.2
COL7A1-203ENST00000459756 LENG8Q96PV6 779 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-203ENST00000459756 TUBGCP5Q96RT8 1024 aa16.31■□□□□ 0.2
COL7A1-203ENST00000459756 PCDH18Q9HCL0 1135 aa16.31■□□□□ 0.2
COL7A1-203ENST00000459756 RCOR3Q9P2K3 495 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-203ENST00000459756 FTSJ1Q9UET6 329 aa16.31■□□□□ 0.2
COL7A1-203ENST00000459756 IPO11Q9UI26 975 aaKnown RBP16.31■□□□□ 0.2
COL7A1-203ENST00000459756 COL5A1P20908 1838 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-203ENST00000459756 EPG5Q9HCE0 2579 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 TSPAN11A1L157 253 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 IGLON5A6NGN9 336 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 A6NNZ2 444 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 SPINT1O43278 529 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 ATXN1LP0C7T5 689 aaKnown RBP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 TIMP2P16035 220 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 XPAP23025 273 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 SSR1P43307 286 aaKnown RBP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 CLDN2P57739 230 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 NSUN2Q08J23 767 aaKnown RBP eCLIP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 KRT81Q14533 505 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 KYAT3Q6YP21 454 aaKnown RBP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 GCNT7Q6ZNI0 430 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 ARHGAP36Q6ZRI8 547 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 SRLQ86TD4 932 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 CHCHD4Q8N4Q1 142 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 TSEN2Q8NCE0 465 aaKnown RBP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 OR13H1Q8NG92 308 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 TSC1Q92574 1164 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 CINPQ9BW66 212 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-203ENST00000459756 SUV39H2Q9H5I1 410 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 KLHL11Q9NVR0 708 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 TOR4AQ9NXH8 423 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 GGT7Q9UJ14 662 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 ITM2BQ9Y287 266 aa16.3■□□□□ 0.2
COL7A1-203ENST00000459756 FAM221BA6H8Z2 402 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 FPGTO14772 594 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 RAD51BO15315 384 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 PROSCO94903 275 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 DKK1O94907 266 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 PIGNO95427 931 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 TMEM253P0C7T8 217 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 SERPINB6P35237 376 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 RENBPP51606 427 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 ADKP55263 362 aaKnown RBP16.29■□□□□ 0.2
COL7A1-203ENST00000459756 CDH6P55285 790 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 ELP6Q0PNE2 266 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 BNIP3Q12983 259 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 CFAP58Q5T655 872 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 TMCO4Q5TGY1 634 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 BRAT1Q6PJG6 821 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 Q6ZSR6 202 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 PTAR1Q7Z6K3 402 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-203ENST00000459756 CNGA4Q8IV77 575 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 PNPLA1Q8N8W4 532 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 DENND6BQ8NEG7 585 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 FAM71BQ8TC56 605 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 CXorf40AQ8TE69 158 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 IFT43Q96FT9 208 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 BMFQ96LC9 184 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 CCDC42Q96M95 316 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 PSKH2Q96QS6 385 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 KLF6Q99612 283 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-203ENST00000459756 CALN1Q9BXU9 219 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 PACSIN1Q9BY11 444 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 RBSNQ9H1K0 784 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 ATP13A3Q9H7F0 1226 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 GPR27Q9NS67 375 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 ETNK2Q9NVF9 386 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 SEPT3Q9UH03 358 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 KLK13Q9UKR3 277 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 MSRB2Q9Y3D2 182 aa16.29■□□□□ 0.2
COL7A1-203ENST00000459756 MAP1BP46821 2468 aaKnown RBP16.28■□□□□ 0.2
COL7A1-203ENST00000459756 POM121BA6NF01 834 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 BUB1BO60566 1050 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-203ENST00000459756 SERPINA4P29622 427 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 RABIFP47224 123 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 RGRP47804 291 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 LBRQ14739 615 aaKnown RBP16.28■□□□□ 0.2
COL7A1-203ENST00000459756 UGP2Q16851 508 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 TMEM52BQ4KMG9 183 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 LRRC73Q5JTD7 316 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 SARM1Q6SZW1 724 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 UNQ6494/PRO21346Q6UXR6 183 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 KANSL1Q7Z3B3 1105 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 GAS2L3Q86XJ1 694 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 CAMK1DQ8IU85 385 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 TP53INP2Q8IXH6 220 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 SLC22A18ASQ8N1D0 253 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 EID2Q8N6I1 236 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 CHP1Q99653 195 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 C1QTNF7Q9BXJ2 289 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 NHEJ1Q9H9Q4 299 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-203ENST00000459756 AKAP13Q12802 2813 aa16.28■□□□□ 0.2
COL7A1-203ENST00000459756 ASPMQ8IZT6 3477 aa16.27■□□□□ 0.2
COL7A1-203ENST00000459756 GOLGA8CPA6NN73 597 aa16.27■□□□□ 0.2
COL7A1-203ENST00000459756 MMP20O60882 483 aa16.27■□□□□ 0.2
COL7A1-203ENST00000459756 TM7SF2O76062 418 aa16.27■□□□□ 0.2
COL7A1-203ENST00000459756 LDOC1O95751 146 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-203ENST00000459756 KRT7P08729 469 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms