RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 C5AR1P21730 350 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 DRD3P35462 400 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 MAPK8P45983 427 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 KCNJ1P48048 391 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 TPMTP51580 245 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 CNTN1Q12860 1018 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 MAP7D1Q3KQU3 841 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 ZNF528Q3MIS6 628 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 ANKRD20A2Q5SQ80 823 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 ANKRD20A1Q5TYW2 823 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 ANKRD20A3Q5VUR7 823 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 FAM46CQ5VWP2 391 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 GDPD4Q6W3E5 623 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 PARS2Q7L3T8 475 aaKnown RBP13.17□□□□□ -0.3
VPS33A-202ENST00000451053 GSTA5Q7RTV2 222 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 PID1Q7Z2X4 250 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 FAM124AQ86V42 546 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 LONP2Q86WA8 852 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 FAM160A2Q8N612 972 aaPredicted RBP13.17□□□□□ -0.3
VPS33A-202ENST00000451053 CCDC110Q8TBZ0 833 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 CCHCR1Q8TD31 782 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 RUBCNQ92622 972 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 LRIG1Q96JA1 1093 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 KLHL32Q96NJ5 620 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 VAT1Q99536 393 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 RAB17Q9H0T7 212 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 GLOD4Q9HC38 313 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 ITM2CQ9NQX7 267 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 HAUS2Q9NVX0 235 aa13.17□□□□□ -0.3
VPS33A-202ENST00000451053 EML5Q05BV3 1969 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 C5orf60A6NFR6 353 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 C16orf96A6NNT2 1141 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TRAFD1O14545 582 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 RNASEH2AO75792 299 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 STK10O94804 968 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TUBBP07437 444 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 ITGB7P26010 798 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 STIP1P31948 543 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 ACTN2P35609 894 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 P2RY2P41231 377 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 CD86P42081 329 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TERF1P54274 439 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SKOR1P84550 965 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 BCL2L1Q07817 233 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TCF15Q12870 199 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TRAF2Q12933 501 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SRSF5Q13243 272 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 GRM3Q14832 879 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 PPP1R7Q15435 360 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 KCTD19Q17RG1 926 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TTC31Q49AM3 519 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 ZNF805Q5CZA5 627 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 RALGPS1Q5JS13 557 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TTC27Q6P3X3 843 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 PRUNE1Q86TP1 453 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 PRPF39Q86UA1 669 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 ZSWIM9Q86XI8 627 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 HDDC3Q8N4P3 179 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 LRRN4CLQ8ND94 238 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SPATA22Q8NHS9 363 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 GANCQ8TET4 914 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 RTP4Q96DX8 246 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 IMP4Q96G21 291 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 PPP1R16AQ96I34 528 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SPATA13Q96N96 652 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 RBM15Q96T37 977 aaKnown RBP eCLIP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 OMDQ99983 421 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 GORASP1Q9BQQ3 440 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 OSBPL1AQ9BXW6 950 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 FAM126AQ9BYI3 521 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SLC25A51Q9H1U9 297 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 GBA3Q9H227 469 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 NEUROG2Q9H2A3 272 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SUV39H2Q9H5I1 410 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 ATP13A3Q9H7F0 1226 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 ZSCAN32Q9NX65 697 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 FBXL12Q9NXK8 326 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 RSPH14Q9UHP6 348 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 TRHDEQ9UKU6 1024 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 SCML1Q9UN30 329 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 UTP11Q9Y3A2 253 aaKnown RBP13.16□□□□□ -0.3
VPS33A-202ENST00000451053 PCDHGC4Q9Y5F7 938 aa13.16□□□□□ -0.3
VPS33A-202ENST00000451053 IGHV1OR15-9A0A0B4J2B8 117 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 TSPAN11A1L157 253 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 H0Y858 1186 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 NDC80O14777 642 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 CTIFO43310 598 aaKnown RBP13.15□□□□□ -0.3
VPS33A-202ENST00000451053 RAD51CO43502 376 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 ZNF217O75362 1048 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 IFNB1P01574 187 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 IGLV3-19P01714 112 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 ETS1P14921 441 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 CES1P23141 567 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 MCM3P25205 808 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 SERPINA4P29622 427 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 LRRC73Q5JTD7 316 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 PIP5KL1Q5T9C9 394 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 AGBL4Q5VU57 503 aa13.15□□□□□ -0.3
VPS33A-202ENST00000451053 C4orf22Q6V702 233 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms