RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GRM3Q14832 879 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 SUZ12Q15022 739 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 TRIP6Q15654 476 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 ANKRD20A8PQ5CZ79 823 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 LRRC73Q5JTD7 316 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 CAMK1DQ8IU85 385 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 HCAR2Q8TDS4 363 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 RHBDD1Q8TEB9 315 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 KLHDC7BQ96G42 594 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 MRFAP1L1Q96HT8 127 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 CINPQ9BW66 212 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 C1QTNF2Q9BXJ5 285 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 CALN1Q9BXU9 219 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 SUV39H2Q9H5I1 410 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 ERVMER34-1Q9H9K5 563 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 GDF3Q9NR23 364 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 KLHL11Q9NVR0 708 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 LCMT1Q9UIC8 334 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 PCOLCE2Q9UKZ9 415 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 BTBD3Q9Y2F9 522 aa12.89□□□□□ -0.35
PRPF40A-203ENST00000448428 RAD51BO15315 384 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 FLRT2O43155 660 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 MAGEC1O60732 1142 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 MTA2O94776 668 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 KRT7P08729 469 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 HNRNPA2B1P22626 353 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 ARHGAP25P42331 645 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 CCT8P50990 548 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 SGCGQ13326 291 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 LBRQ14739 615 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 PDK2Q15119 407 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 GATAD2AQ86YP4 633 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 RHOT2Q8IXI1 618 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 PCDH19Q8TAB3 1148 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 BAHD1Q8TBE0 780 aaPredicted RBP12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 BMFQ96LC9 184 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 NSMCE3Q96MG7 304 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 ZNF641Q96N77 438 aaPredicted RBP12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 ZNF599Q96NL3 588 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 PSKH2Q96QS6 385 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 TUBGCP5Q96RT8 1024 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 KLF6Q99612 283 aaPredicted RBP12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 SEPT3Q9UH03 358 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 INTUQ9ULD6 942 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 HS3ST3A1Q9Y663 406 aa12.88□□□□□ -0.35
PRPF40A-203ENST00000448428 TSPAN11A1L157 253 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 TTC24A2A3L6 582 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 POM121BA6NF01 834 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 MMP20O60882 483 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 LCA5LO95447 670 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 TOP3BO95985 862 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 THEGLP0DJG4 465 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 KDELR1P24390 212 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 SERPINB6P35237 376 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 MAGEA1P43355 309 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 RXRGP48443 463 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 SCNN1BP51168 640 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 RENBPP51606 427 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 BNIP3Q12983 259 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 PAFAH1B3Q15102 231 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 TCEAL1Q15170 157 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 UGP2Q16851 508 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 TMCO4Q5TGY1 634 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 NCBP2-AS2Q69YL0 99 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 GCNT7Q6ZNI0 430 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 ABI3BPQ7Z7G0 1075 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 ZSCAN30Q86W11 494 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 ZSWIM9Q86XI8 627 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 MAP7D3Q8IWC1 876 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 PGBD5Q8N414 524 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 OR13H1Q8NG92 308 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 SAP25Q8TEE9 199 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 ASB12Q8WXK4 309 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 RFFLQ8WZ73 363 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 RAPGEF5Q92565 580 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 LENG8Q96PV6 779 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 ZNF670Q9BS34 389 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 WASF3Q9UPY6 502 aa12.87□□□□□ -0.35
PRPF40A-203ENST00000448428 MFSD11O43934 449 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 ITGAVP06756 1048 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 XPAP23025 273 aaPredicted RBP12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 SERPINA4P29622 427 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 GRK6P43250 576 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 ARRB1P49407 418 aaPredicted RBP12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 SUOXP51687 545 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 SHC2P98077 582 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 BCL2L1Q07817 233 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 FOXC1Q12948 553 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 TMEM52BQ4KMG9 183 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 ZFYVE27Q5T4F4 411 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 BRAT1Q6PJG6 821 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 Q6ZSR6 202 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 GLRX5Q86SX6 157 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 SLCO6A1Q86UG4 719 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 CCDC170Q8IYT3 715 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 ATPAF2Q8N5M1 289 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 PQLC3Q8N755 202 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 FAM174AQ8TBP5 190 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 CENPTQ96BT3 561 aa12.86□□□□□ -0.35
PRPF40A-203ENST00000448428 FAF2Q96CS3 445 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms