RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 EPB42P16452 691 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 GJA1P17302 382 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 PROZP22891 400 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 HNRNPDQ14103 355 aaKnown RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 TXNRD3NBQ6F5E7 133 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 RNF19BQ6ZMZ0 732 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 RGL4Q8IZJ4 473 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 OR56A4Q8NGH8 313 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 STAG3L4Q8TBR4 150 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 KCNV2Q8TDN2 545 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 LZICQ8WZA0 190 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 SKA1Q96BD8 255 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 PPP1R10Q96QC0 940 aaKnown RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 TNKS2Q9H2K2 1166 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 ZFP14Q9HCL3 533 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 C9IYK1 514 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 CATP04040 527 aaKnown RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 THRAP10827 490 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 HAPLN1P10915 354 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 WASP42768 502 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 RPS24P62847 133 aaKnown RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 IL10RBQ08334 325 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 CCDC157Q569K6 752 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 TTMPQ5BVD1 217 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 TXNDC8Q6A555 127 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 YY1AP1Q9H869 796 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 ZFYVE1Q9HBF4 777 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 CLIC5Q9NZA1 410 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 ARHGAP26Q9UNA1 814 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 GNG14A0A1W2PPG7 69 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 ALADP13716 330 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 RAB30Q15771 203 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 LYPLAL1Q5VWZ2 237 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 MTDHQ86UE4 582 aaKnown RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 PAAF1Q9BRP4 392 aa7.47□□□□□ -1.21
SYNE1-213ENST00000448038 MYO5AQ9Y4I1 1855 aaKnown RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 N4BP2Q86UW6 1770 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-213ENST00000448038 UBR3Q6ZT12 1888 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 MGAT4DA6NG13 374 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 MEIS3P2A8K0S8 358 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 MGEA5O60502 916 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 NDUFS2O75306 463 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 DNTTP04053 509 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 RAB10P61026 200 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 OGDHQ02218 1023 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 PFKFB4Q16877 469 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 DRICH1Q6PGQ1 229 aaPredicted RBP7.46□□□□□ -1.21
SYNE1-213ENST00000448038 C15orf39Q6ZRI6 1047 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 RRM2BQ7LG56 351 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 MILR1Q7Z6M3 343 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 FAM9CQ8IZT9 166 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 OR4K2Q8NGD2 314 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 METTL6Q8TCB7 284 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 POF1BQ8WVV4 589 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 BADQ92934 168 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 RAD9AQ99638 391 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 GPR62Q9BZJ7 368 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 TCF7L2Q9NQB0 619 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 KIF17Q9P2E2 1029 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 GJD2Q9UKL4 321 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 FCF1Q9Y324 198 aaKnown RBP7.46□□□□□ -1.21
SYNE1-213ENST00000448038 PCDHGC4Q9Y5F7 938 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 MYO9BQ13459 2157 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 MT-CYBP00156 380 aaPredicted RBP7.46□□□□□ -1.21
SYNE1-213ENST00000448038 CAP1Q01518 475 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 GAD2Q05329 585 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 RASA2Q15283 850 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 FNBP1LQ5T0N5 605 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 ANKRD22Q5VYY1 191 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 PACS1Q6VY07 963 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 PARP9Q8IXQ6 854 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 DTX3LQ8TDB6 740 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 ATXN2LQ8WWM7 1075 aaKnown RBP7.46□□□□□ -1.21
SYNE1-213ENST00000448038 ECSITQ9BQ95 431 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 HGH1Q9BTY7 390 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 GPR88Q9GZN0 384 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 ZNF446Q9NWS9 450 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 OPTCQ9UBM4 332 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 INSL5Q9Y5Q6 135 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 ACTL7BQ9Y614 415 aa7.46□□□□□ -1.21
SYNE1-213ENST00000448038 UBDO15205 165 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 EPHX1P07099 455 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 CTSEP14091 401 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 SLC2A4P14672 509 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 TFEBP19484 476 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 MAGEA11P43364 429 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ADGRF1Q5T601 910 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF784Q8NCA9 323 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ACMSDQ8TDX5 336 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 RPL10LQ96L21 214 aaKnown RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 TMEM209Q96SK2 561 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 COPS8Q99627 209 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 THUMPD3Q9BV44 507 aaKnown RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 OSBPL2Q9H1P3 480 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 EFCAB1Q9HAE3 211 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 IL23AQ9NPF7 189 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 MAN1C1Q9NR34 630 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 CHRAC1Q9NRG0 131 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ARIH1Q9Y4X5 557 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 SPACA6W5XKT8 324 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms