RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ZNF354CQ86Y25 554 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 HID1Q8IV36 788 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 KYQ8NBH2 561 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 TP53I13Q8NBR0 393 aaPredicted RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 OR2AP1Q8NGE2 309 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 CCDC74AQ96AQ1 378 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 EXOC2Q96KP1 924 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 EPAS1Q99814 870 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 NAA15Q9BXJ9 866 aaKnown RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 TRIM4Q9C037 500 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 NOL6Q9H6R4 1146 aaKnown RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 PPARGC1AQ9UBK2 798 aaKnown RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 SPASTQ9UBP0 616 aa8.21□□□□□ -1.1
VIM-202ENST00000421459 COL27A1Q8IZC6 1860 aaPredicted RBP8.21□□□□□ -1.1
VIM-202ENST00000421459 PTPRQQ9UMZ3 2332 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 FLNBO75369 2602 aaKnown RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 COL12A1Q99715 3063 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 A0A1W2PQM1 296 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 LMO7DNF2Z398 122 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 NTN3O00634 580 aaPredicted RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 TPP1O14773 563 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 BUB1O43683 1085 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 KDELR3O43731 214 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SLC28A2O43868 658 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 NOBOXO60393 691 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 TM7SF2O76062 418 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 GFPT2O94808 682 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 TMCC1O94876 653 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 LRIG2O94898 1065 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 PIGNO95427 931 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 POP4O95707 220 aaKnown RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 GSRP00390 522 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ANXA6P08133 673 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 PLEKP08567 350 aaPredicted RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 RHOQP17081 205 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SLC5A2P31639 672 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SCNN1AP37088 669 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 BPIFB4P59827 614 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 PPARDQ03181 441 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SPIDRQ14159 915 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 POLD3Q15054 466 aaPredicted RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 CYTH1Q15438 398 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 TPD52L1Q16890 204 aaPredicted RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 ALG11Q2TAA5 492 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ARL13BQ3SXY8 428 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 LINC00303Q3SY05 128 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ENPP7Q6UWV6 458 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SDR16C5Q8N3Y7 309 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ARL14Q8N4G2 192 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 Q8N9G6 341 aaPredicted RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 PLA2G15Q8NCC3 412 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 WDR36Q8NI36 951 aaKnown RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 PCDH19Q8TAB3 1148 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 FAM174AQ8TBP5 190 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 EPS8L1Q8TE68 723 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 CXorf40AQ8TE69 158 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SNRNP27Q8WVK2 155 aaKnown RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 BTN2A2Q8WVV5 523 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ASB12Q8WXK4 309 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ISG20Q96AZ6 181 aaKnown RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 WBP1Q96G27 269 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 PCDHB18PQ96TA0 734 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 C11orf70Q9BRQ4 267 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 TUBGCP2Q9BSJ2 902 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SLC13A1Q9BZW2 595 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 EPB41L5Q9HCM4 733 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 SAMSN1Q9NSI8 373 aaKnown RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 EVA1BQ9NVM1 165 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 TMEM248Q9NWD8 314 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 ATXN7L1Q9ULK2 861 aaPredicted RBP8.2□□□□□ -1.1
VIM-202ENST00000421459 OR1A2Q9Y585 309 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 PAXBP1Q9Y5B6 917 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 PCDHGA8Q9Y5G5 932 aa8.2□□□□□ -1.1
VIM-202ENST00000421459 KNTC1P50748 2209 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 CCDC187A0A096LP49 1063 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 C2CD4BA6NLJ0 364 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 F8VZ95 297 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 PLD2O14939 933 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 EPHB6O15197 1021 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 BUB1BO60566 1050 aaPredicted RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 RAMP2O60895 175 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 PCCBP05166 539 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 RPLP0P05388 317 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 UCHL3P15374 230 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 WT1P19544 449 aaPredicted RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 ITIH1P19827 911 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 RFC1P35251 1148 aaPredicted RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 UGT1A5P35504 534 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 MAPKAPK2P49137 400 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 RPIAP49247 311 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 HDAC4P56524 1084 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 SNRPD1P62314 119 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 YPEL5P62699 121 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 CYP4F2P78329 520 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 FMO1Q01740 532 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 NFATC3Q12968 1075 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 PTP4A2Q12974 167 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 PTK2BQ14289 1009 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 INPP5AQ14642 412 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 WSCD2Q2TBF2 565 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms