RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PRRT3Q5FWE3 981 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 CT47A1Q5JQC4 288 aaPredicted RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 EFHC2Q5JST6 749 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 FOXR1Q6PIV2 292 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 PHACTR4Q8IZ21 702 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 FAM181AQ8N9Y4 354 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 C3orf20Q8ND61 904 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 CXorf40AQ8TE69 158 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 NTAN1Q96AB6 310 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 RAB7BQ96AH8 199 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 GDAP1L1Q96MZ0 367 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 DEPDC7Q96QD5 511 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 EPAS1Q99814 870 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP4-204ENST00000416417 TTYH3Q9C0H2 523 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 CLPBQ9H078 707 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 SYNDIG1Q9H7V2 258 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 LHX3Q9UBR4 397 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 APOBEC3BQ9UH17 382 aaKnown RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 LIMA1Q9UHB6 759 aaKnown RBP11.71□□□□□ -0.53
USP4-204ENST00000416417 TRPM6Q9BX84 2022 aa11.71□□□□□ -0.53
USP4-204ENST00000416417 IGSF6O95976 241 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 CALB1P05937 261 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 ATP1A3P13637 1013 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 RGRP47804 291 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 DUSP3P51452 185 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 ZNF143P52747 638 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 THOP1P52888 689 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 TLE3Q04726 772 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 SERINC3Q13530 473 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 IRF4Q15306 451 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 CA9Q16790 459 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 C3orf38Q5JPI3 329 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 PPP1R15BQ5SWA1 713 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 FAXCQ5TGI0 409 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 KCTD16Q68DU8 428 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 ZCCHC8Q6NZY4 707 aaKnown RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 SLC35F3Q8IY50 421 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 CACTIN-AS1Q8N1I8 211 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 TP53I13Q8NBR0 393 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 FAM174AQ8TBP5 190 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 TSACCQ96A04 125 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 ATXN7L3BQ96GX2 97 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 LGMNQ99538 433 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 IL12RB2Q99665 862 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 NCAPGQ9BPX3 1015 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 LRRC61Q9BV99 259 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 DUSP23Q9BVJ7 150 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 OSBPL1AQ9BXW6 950 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 HSD3B7Q9H2F3 369 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 CPNE5Q9HCH3 593 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 SIRPGQ9P1W8 387 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 AGRPO00253 132 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 TEX33O43247 280 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 BUB1BO60566 1050 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 C1QL1O75973 258 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 TM7SF2O76062 418 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 TSHRP16473 764 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 CDK11BP21127 795 aaKnown RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 EIF4A3P38919 411 aaKnown RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 GSCP56915 257 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 MYL5Q02045 173 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 NR0B2Q15466 257 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 ISXQ2M1V0 245 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 WSCD2Q2TBF2 565 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 SASS6Q6UVJ0 657 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 RBM43Q6ZSC3 357 aaKnown RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 APTXQ7Z2E3 356 aaKnown RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 RD3Q7Z3Z2 195 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 ZSWIM9Q86XI8 627 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 MCOLN2Q8IZK6 566 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 AOPEPQ8N6M6 819 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 DENND6BQ8NEG7 585 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 SLC39A7Q92504 469 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 UBL7Q96S82 380 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 TRIM7Q9C029 511 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 SPASTQ9UBP0 616 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 GULP1Q9UBP9 304 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 UBA2Q9UBT2 640 aaPredicted RBP11.7□□□□□ -0.54
USP4-204ENST00000416417 PCSK1NQ9UHG2 260 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 SATB2Q9UPW6 733 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 OR1A2Q9Y585 309 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 CSNK1G3Q9Y6M4 447 aa11.7□□□□□ -0.54
USP4-204ENST00000416417 YY2O15391 372 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 GP1BAP07359 652 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 ANXA6P08133 673 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 XPAP23025 273 aaPredicted RBP11.69□□□□□ -0.54
USP4-204ENST00000416417 RAD51Q06609 339 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 NCAPHQ15003 741 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 ACAD10Q6JQN1 1059 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 DCUN1D2Q6PH85 259 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 ARHGAP36Q6ZRI8 547 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 CAMK1DQ8IU85 385 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 HID1Q8IV36 788 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 TP53INP2Q8IXH6 220 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 ASB12Q8WXK4 309 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 PEBP4Q96S96 227 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 CNPY3Q9BT09 278 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 SLC39A8Q9C0K1 460 aa11.69□□□□□ -0.54
USP4-204ENST00000416417 POLR1BQ9H9Y6 1135 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms