RNA–Protein interactions for RNA: ENST00000409031.5

SMPD4-202, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD4, Length 4,896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-202ENST00000409031 GATA5Q9BWX5 397 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 PRDM12Q9H4Q4 367 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 SEMA4BQ9NPR2 832 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 PXMP2Q9NR77 195 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 PNMA8BQ9ULN7 279 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 BCAP31P51572 246 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ANGPT1Q15389 498 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 IL27RAQ6UWB1 636 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 CYP4Z2PQ8N1L4 340 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 CENPSQ8N2Z9 138 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 WDR36Q8NI36 951 aaKnown RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ROPN1LQ96C74 230 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ZNF70Q9UC06 446 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 PADI4Q9UM07 663 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 C1orf167Q5SNV9 1468 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 MLYCDO95822 493 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ZNF284Q2VY69 593 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 SYTL3Q4VX76 610 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ATP6V0D2Q8N8Y2 350 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 CHST13Q8NET6 341 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 NXNL1Q96CM4 212 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 PSME2Q9UL46 239 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ATF5Q9Y2D1 282 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 KCNQ2O43526 872 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 RNASEH1O60930 286 aaKnown RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 CHRNB2P17787 502 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 HERC3Q15034 1050 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ANKS3Q6ZW76 656 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 FGD2Q7Z6J4 655 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 C12orf43Q96C57 262 aaKnown RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 CINPQ9BW66 212 aaPredicted RBP17.8■□□□□ 0.44
SMPD4-202ENST00000409031 LRFN2Q9ULH4 789 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 ERGIC3Q9Y282 383 aa17.8■□□□□ 0.44
SMPD4-202ENST00000409031 MEGF6O75095 1541 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 NDUFS2O75306 463 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 PORP16435 677 aaPredicted RBP17.79■□□□□ 0.44
SMPD4-202ENST00000409031 ZNF549Q6P9A3 640 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 RELL1Q8IUW5 271 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 ASZ1Q8WWH4 475 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 TNPO3Q9Y5L0 923 aaKnown RBP17.79■□□□□ 0.44
SMPD4-202ENST00000409031 PEX16Q9Y5Y5 336 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 OR6B1O95007 311 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 ANGPTL1O95841 491 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 PRKAR1AP10644 381 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 TKTL1P51854 596 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 THOP1P52888 689 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 GNA12Q03113 381 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 NEK5Q6P3R8 708 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 TTLL6Q8N841 843 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 SP140LQ9H930 580 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 FBXO5Q9UKT4 447 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 BCLAF3A2AJT9 711 aaKnown RBP17.79■□□□□ 0.44
SMPD4-202ENST00000409031 NOTOA8MTQ0 251 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 CHI3L1P36222 383 aaPredicted RBP17.79■□□□□ 0.44
SMPD4-202ENST00000409031 MPP2Q14168 576 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 PYDC2Q56P42 97 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 GLYATQ6IB77 296 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 C16orf62Q7Z3J2 963 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 B3GALNT2Q8NCR0 500 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 ZNF420Q8TAQ5 688 aaPredicted RBP17.79■□□□□ 0.44
SMPD4-202ENST00000409031 DCAKDQ8WVC6 231 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 ASB9Q96DX5 294 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 IKZF4Q9H2S9 585 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 SETD4Q9NVD3 440 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 SPEF1Q9Y4P9 236 aa17.79■□□□□ 0.44
SMPD4-202ENST00000409031 SEMA3DO95025 777 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 LTFP02788 710 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 YBX3P16989 372 aaKnown RBP eCLIP17.78■□□□□ 0.445e-7■□□□□ 9.7
SMPD4-202ENST00000409031 NR4A1P22736 598 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 BICRALQ6AI39 1079 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 GATAD2AQ86YP4 633 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 PARP8Q8N3A8 854 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 ITPKCQ96DU7 683 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 SPATA7Q9P0W8 599 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 SH3BP1Q9Y3L3 701 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 GUCA1CO95843 209 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 ECHS1P30084 290 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 PGM5Q15124 567 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 HIST2H2ACQ16777 129 aaPredicted RBP17.78■□□□□ 0.44
SMPD4-202ENST00000409031 ZNF423Q2M1K9 1284 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 HIST2H2AA3Q6FI13 130 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 FAM156AQ8NDB6 213 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 AP3S1Q92572 193 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 MKL1Q969V6 931 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 DMAC2Q9NW81 257 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 H3BN98 237 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 BTN3A1O00481 513 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 LRCH4O75427 683 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 XRCC1P18887 633 aaPredicted RBP17.78■□□□□ 0.44
SMPD4-202ENST00000409031 LAMTOR4Q0VGL1 99 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 MYBPC3Q14896 1274 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 TMEM53Q6P2H8 277 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 RTL3Q8N8U3 475 aaKnown RBP17.78■□□□□ 0.44
SMPD4-202ENST00000409031 JOSD2Q8TAC2 188 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 EPB41L4BQ9H329 900 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 CAB39LQ9H9S4 337 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 MAPRE3Q9UPY8 281 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 J3QRK9 145 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 SLC22A1O15245 554 aa17.78■□□□□ 0.44
SMPD4-202ENST00000409031 SLC22A3O75751 556 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms