RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ALDH6A1Q02252 535 aaKnown RBP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 LIN52Q52LA3 116 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 C1orf220Q5T0J3 134 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 C6orf52Q5T4I8 152 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 FAM171A1Q5VUB5 890 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 TMEM26Q6ZUK4 368 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 LZTR1Q8N653 840 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 LMO3Q8TAP4 145 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 MAGEC3Q8TD91 643 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 ZBED3Q96IU2 234 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 BPIFA1Q9NP55 256 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 VTA1Q9NP79 307 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 NKX1-2Q9UD57 310 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 ZNHIT2Q9UHR6 403 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 ZNF112Q9UJU3 913 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 COMMD3-BMI1R4GMX3 469 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 PDHXO00330 501 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 PLCL1Q15111 1095 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 PTPRNQ16849 979 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 TIGD2Q4W5G0 525 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 RAP1GAP2Q684P5 730 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 ARHGAP36Q6ZRI8 547 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 C16orf59Q7L2K0 433 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 OTOP3Q7RTS5 596 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 ZNF276Q8N554 614 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 C12orf50Q8NA57 414 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 CASP10Q92851 521 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 TMEM169Q96HH4 297 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 SEMA3CQ99985 751 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 REXO4Q9GZR2 422 aaKnown RBP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 TRIM45Q9H8W5 580 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.85□□□□□ -0.67
CCDC40-204ENST00000397545 TRPM5Q9NZQ8 1165 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 TMEM59LQ9UK28 342 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 INVSQ9Y283 1065 aa10.85□□□□□ -0.67
CCDC40-204ENST00000397545 GPR25O00155 361 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MFSD11O43934 449 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 WFS1O76024 890 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 STAU1O95793 577 aaKnown RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 UNGP13051 313 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ALOX12P18054 663 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 RTP1P59025 263 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 NAB1Q13506 487 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 STARD3Q14849 445 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 SYTL1Q8IYJ3 562 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MAML3Q96JK9 1138 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ABHD16BQ9H3Z7 469 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 CDH22Q9UJ99 828 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 PSMD13Q9UNM6 376 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 GNEQ9Y223 722 aaKnown RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 TK2O00142 265 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 CRHR1P34998 444 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 CHI3L1P36222 383 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 GRIA1P42261 906 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 NRG1Q02297 640 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ZNF618Q5T7W0 954 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 GCNT7Q6ZNI0 430 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 TLK2Q86UE8 772 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 UNC5BQ8IZJ1 945 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 DSELQ8IZU8 1212 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 PLEKHG4BQ96PX9 1271 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MARCH2Q9P0N8 246 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MORF4L1Q9UBU8 362 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 TUBGCP4Q9UGJ1 667 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 TMCC3Q9ULS5 477 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 SLC12A4Q9UP95 1085 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 PCDHB7Q9Y5E2 793 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MAP1BP46821 2468 aaKnown RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 DHRS12A0PJE2 317 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 GLTPD2A6NH11 291 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ALOX15P16050 662 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 AAGABQ6PD74 315 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 NT5DC4Q86YG4 428 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 NXNL1Q96CM4 212 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MAGED4Q96JG8 741 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 SERPINB11Q96P15 392 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 COLEC11Q9BWP8 271 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 GATA5Q9BWX5 397 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 U3KQV3 271 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 SDK1Q7Z5N4 2213 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MYPNQ86TC9 1320 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 CSH1P0DML2 217 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 CSH2P0DML3 217 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 S100A3P33764 101 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 RABGGTBP53611 331 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 WNT3AP56704 352 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 IL2P60568 153 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ACVR2BQ13705 512 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MFSD10Q14728 455 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 TYW3Q6IPR3 259 aaKnown RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 PRMT9Q6P2P2 845 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ZNF781Q8N8C0 355 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 STAG3L4Q8TBR4 150 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 BTN2A2Q8WVV5 523 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 ZNF516Q92618 1163 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 DGCR14Q96DF8 476 aaKnown RBP10.84□□□□□ -0.67
CCDC40-204ENST00000397545 MED8Q96G25 268 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 HBEGFQ99075 208 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 STRA6Q9BX79 667 aa10.84□□□□□ -0.67
CCDC40-204ENST00000397545 TM6SF2Q9BZW4 377 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms