RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TAF1BQ53T94 588 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CERCAMQ5T4B2 595 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 FAM151BQ6UXP7 276 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ZC3H3Q8IXZ2 948 aaKnown RBP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 RLN3Q8WXF3 142 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 GRAMD1AQ96CP6 724 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 RTP3Q9BQQ7 232 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 TMEM109Q9BVC6 243 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 PITPNM3Q9BZ71 974 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 PCMTD2Q9NV79 361 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 COL11A1P12107 1806 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ERVK-10P10266 1014 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 RHOQP17081 205 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 PTPN9P43378 593 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 GEMIN4P57678 1058 aaKnown RBP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 MUM1Q2TAK8 710 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CRTC3Q6UUV7 619 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 VITQ6UXI7 678 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 BBS12Q6ZW61 710 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 RNF31Q96EP0 1072 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF670Q9BS34 389 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ATP13A3Q9H7F0 1226 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CLIC5Q9NZA1 410 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 DTLQ9NZJ0 730 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 MEI4A8MW99 385 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CFAP99D6REC4 459 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 NCAM2O15394 837 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 DDX3YO15523 660 aaKnown RBP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 SRP72O76094 671 aaKnown RBP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 PDHA1P08559 390 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ALADP13716 330 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 L1CAMP32004 1257 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CDKN2BP42772 138 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 MAGEA11P43364 429 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 HSPA14Q0VDF9 509 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 CNGA3Q16281 694 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ITPRIPL2Q3MIP1 535 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 SGO1Q5FBB7 561 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 ARSIQ5FYB1 569 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 TMCO4Q5TGY1 634 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 EXOC3L1Q86VI1 746 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 AGGF1Q8N302 714 aaeCLIP10.41□□□□□ -0.74
COL6A3-205ENST00000392004 OR8D1Q8WZ84 308 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 SERPINB12Q96P63 405 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 NPY6RQ99463 290 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 OSER1Q9NX31 292 aa10.41□□□□□ -0.74
COL6A3-205ENST00000392004 COPEO14579 308 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 KRT38O76015 456 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 FGF19O95750 216 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 HOXB2P14652 356 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ITIH2P19823 946 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 CLDN10P78369 228 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 MRPS35P82673 323 aaKnown RBP10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF470Q6ECI4 717 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 POLNQ7Z5Q5 900 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ZSWIM3Q96MP5 696 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 YIPF2Q9BWQ6 316 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ARHGEF3Q9NR81 526 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ZNHIT2Q9UHR6 403 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 RAB23Q9ULC3 237 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 FZD10Q9ULW2 581 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 TRIM33Q9UPN9 1127 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 RANBP2P49792 3224 aaKnown RBP10.4□□□□□ -0.74
COL6A3-205ENST00000392004 SDR42E2A6NKP2 422 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 PMM2O15305 246 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 MTX2O75431 263 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 PIGNO95427 931 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 MT-CO1P00395 513 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 CYP11A1P05108 521 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 CFIP05156 583 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 DNAJB1P25685 340 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ECT2LQ008S8 904 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 DDX39BQ13838 428 aaKnown RBP10.4□□□□□ -0.74
COL6A3-205ENST00000392004 PLCL1Q15111 1095 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 FAM171BQ6P995 826 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ZDHHC24Q6UX98 284 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 NAPRTQ6XQN6 538 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 TSTD1Q8NFU3 115 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 CXorf40AQ8TE69 158 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 SIPA1Q96FS4 1042 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 SLC7A5P2Q9GIP4 190 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 ASB8Q9H765 288 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 DZANK1Q9NVP4 752 aa10.4□□□□□ -0.74
COL6A3-205ENST00000392004 NCANO14594 1321 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 C1QTNF3-AMACRE9PGA6 284 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 ELFN1P0C7U0 828 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 RALBP11234 206 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 CASP2P42575 452 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 ZNF132P52740 706 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 GDF10P55107 478 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 UBE3AQ05086 875 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 GPNMBQ14956 572 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 DHCR24Q15392 516 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 PLA2G4EQ3MJ16 856 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 FAM78AQ5JUQ0 283 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 HDDC3Q8N4P3 179 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 MAFAQ8NHW3 353 aaPredicted RBP10.4□□□□□ -0.75
COL6A3-205ENST00000392004 KCTD13Q8WZ19 329 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 CYP4F12Q9HCS2 524 aa10.4□□□□□ -0.75
COL6A3-205ENST00000392004 SPHK2Q9NRA0 654 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms