RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CLPTM1LQ96KA5 538 aa9.75□□□□□ -0.85
COL6A3-204ENST00000392003 GATA5Q9BWX5 397 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-204ENST00000392003 COG4Q9H9E3 785 aa9.75□□□□□ -0.85
COL6A3-204ENST00000392003 CREBZFQ9NS37 354 aa9.75□□□□□ -0.85
COL6A3-204ENST00000392003 TBC1D13Q9NVG8 400 aa9.75□□□□□ -0.85
COL6A3-204ENST00000392003 NMRK1Q9NWW6 199 aa9.75□□□□□ -0.85
COL6A3-204ENST00000392003 NDE1Q9NXR1 346 aa9.75□□□□□ -0.85
COL6A3-204ENST00000392003 TRIM64CA6NLI5 447 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TBX10O75333 385 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 PENKP01210 267 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-204ENST00000392003 STMN1P16949 149 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SLC25A3Q00325 362 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 CMPK2Q5EBM0 449 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 RABGAP1LQ5R372 815 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 VWA5B1Q5TIE3 1220 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 LIPMQ5VYY2 423 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 METTL21CQ5VZV1 264 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ZYG11AQ6WRX3 759 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ARHGAP36Q6ZRI8 547 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SLC24A5Q71RS6 500 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF781Q8N8C0 355 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 FBXO27Q8NI29 283 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SCG3Q8WXD2 468 aaKnown RBP9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ELMO2Q96JJ3 720 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TTC1Q99614 292 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 IL12RB2Q99665 862 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 PRKD2Q9BZL6 878 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 CYP4F11Q9HBI6 524 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SLC7A8Q9UHI5 535 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 NUDT5Q9UKK9 219 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 PCDHB8Q9UN66 801 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 RAP2CQ9Y3L5 183 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TSC2P49815 1807 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 LOC100653049A0A140TA62 436 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 MOXD2PA6NHM9 499 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 E9PBE3 544 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 DCXO43602 365 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 FOXD2O60548 495 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-204ENST00000392003 KLHL41O60662 606 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 KRT34O76011 436 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 PRKCGP05129 697 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 CKBP12277 381 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 CRABP2P29373 138 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 GLRBP48167 497 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 NEK2P51955 445 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 HK2P52789 917 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 PRKAA1Q13131 559 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TUBB3Q13509 450 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 NFE2Q16621 373 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SLC39A12Q504Y0 691 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 NOMO2Q5JPE7 1267 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SEL1L3Q68CR1 1132 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 KDELC2Q7Z4H8 507 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 CLEC14AQ86T13 490 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 SLC41A1Q8IVJ1 513 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ARHGAP12Q8IWW6 846 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 UCMAQ8WVF2 138 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 CASP10Q92851 521 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF333Q96JL9 665 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TCF7L2Q9NQB0 619 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 OXSMQ9NWU1 459 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 IPO11Q9UI26 975 aaKnown RBP9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TMCO1Q9UM00 188 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 ARHGAP26Q9UNA1 814 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 PLA2G4CQ9UP65 541 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 TCAF1Q9Y4C2 921 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 GMEB1Q9Y692 573 aa9.74□□□□□ -0.85
COL6A3-204ENST00000392003 FAM95CA0A1B0GW59 222 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 SLCO1B7G3V0H7 640 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 G3V2L1 256 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 IGLV3-25P01717 112 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 GRK4P32298 578 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 ACTR3P61158 418 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 MRPS35P82673 323 aaKnown RBP9.73□□□□□ -0.85
COL6A3-204ENST00000392003 DSC3Q14574 896 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 SLC44A4Q53GD3 710 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 NXNQ6DKJ4 435 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 RTL3Q8N8U3 475 aaKnown RBP9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CALML6Q8TD86 181 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 KCTD4Q8WVF5 259 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 SHCBP1LQ9BZQ2 653 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 VCXQ9H320 206 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 GPAMQ9HCL2 828 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 LRCH1Q9Y2L9 728 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 TRIM17Q9Y577 477 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 PCDHB7Q9Y5E2 793 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 A0A1W2PQH9 124 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 E9PAM4 449 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 HDAC3O15379 428 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 MAFKO60675 156 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 DNAJB1P25685 340 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 PRDX6P30041 224 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 ERFP50548 548 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 RPL14P50914 215 aaKnown RBP9.73□□□□□ -0.85
COL6A3-204ENST00000392003 RENBPP51606 427 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 NAGLUP54802 743 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 RAB10P61026 200 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CTBP1Q13363 440 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 PCSK7Q16549 785 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 ESRP1Q6NXG1 681 aaKnown RBP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms