RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PROX2Q3B8N5 592 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 LRRC73Q5JTD7 316 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 VPS36Q86VN1 386 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 TMPRSS12Q86WS5 348 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 PROSER1Q86XN7 944 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 MARCH9Q86YJ5 346 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 HCAR2Q8TDS4 363 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 CPLX3Q8WVH0 158 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 UCKL1Q9NWZ5 548 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 CWC15Q9P013 229 aaKnown RBP21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 SPEGQ15772 3267 aa21.96■■□□□ 1.11
CCDC28B-201ENST00000373602 SPTY2D1-AS1A0A0U1RR47 76 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 SIGLEC6O43699 453 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 IL1R2P27930 398 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 SUOXP51687 545 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 CAMK2BQ13554 666 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 DPYSQ14117 519 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 FZD2Q14332 565 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 ZSCAN23Q3MJ62 389 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 NPWQ8N729 165 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 CENPTQ96BT3 561 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 SUV39H2Q9H5I1 410 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 CAAP1Q9H8G2 361 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 IFNKQ9P0W0 207 aa21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 LUC7L2Q9Y383 392 aaKnown RBP21.95■■□□□ 1.1
CCDC28B-201ENST00000373602 TSPAN11A1L157 253 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 FAM149AA5PLN7 773 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 MMP20O60882 483 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 PIGNO95427 931 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 ITIH2P19823 946 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 CSNK1DP48730 415 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 ILKQ13418 452 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 DPYSL2Q16555 572 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 BOLA3Q53S33 107 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 LZTR1Q8N653 840 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 OR4C6Q8NH72 309 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 CXorf40AQ8TE69 158 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 THAP2Q9H0W7 228 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 CCDC86Q9H6F5 360 aaKnown RBP21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 ZWILCHQ9H900 591 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 DNAJC28Q9NX36 388 aa21.94■■□□□ 1.1
CCDC28B-201ENST00000373602 A0A087X0T9 212 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 PALMO75781 387 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 TM7SF2O76062 418 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 GYPCP04921 128 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 FAM228BP0C875 321 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 GIMD1P0DJR0 217 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 TCF4P15884 667 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 ACP1P24666 158 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 PFN3P60673 137 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 IL10RBQ08334 325 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 GOLGA4Q13439 2230 aaKnown RBP21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 PIGHQ14442 188 aaPredicted RBP21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 TMEM52BQ4KMG9 183 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 ZNF542PQ5EBM4 170 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 TPRG1LQ5T0D9 272 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 PARGQ86W56 976 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 ASPMQ8IZT6 3477 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 ZNF641Q96N77 438 aaPredicted RBP21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 TUBGCP5Q96RT8 1024 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 SP110Q9HB58 689 aa21.93■■□□□ 1.1
CCDC28B-201ENST00000373602 H3BRJ5 948 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 DFFAO00273 331 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 BUB1BO60566 1050 aaPredicted RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 CSF2P04141 144 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 CYP1A2P05177 515 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 NME1P15531 152 aaKnown RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 XPAP23025 273 aaPredicted RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 RGRP47804 291 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 HNRNPKP61978 463 aaKnown RBP eCLIP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 ELP6Q0PNE2 266 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 PDE1CQ14123 709 aaPredicted RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 RFTN1Q14699 578 aaPredicted RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 UGP2Q16851 508 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 SMTNL2Q2TAL5 461 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 HS1BP3Q53T59 392 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 ARHGAP36Q6ZRI8 547 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 SRLQ86TD4 932 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 NIPA2Q8N8Q9 360 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 TSEN2Q8NCE0 465 aaKnown RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 MDM1Q8TC05 714 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 DKK4Q9UBT3 224 aa21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 IPO11Q9UI26 975 aaKnown RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 TDRD6O60522 2096 aaKnown RBP21.92■■□□□ 1.1
CCDC28B-201ENST00000373602 TRABD2BA6NFA1 517 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 NEMP2A6NFY4 417 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 FFAR2O15552 330 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 RARAP10276 462 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 IGFALSP35858 605 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 ARL4AP40617 200 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 ALKBH5Q6P6C2 394 aaKnown RBP21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 BRAT1Q6PJG6 821 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 KDM7AQ6ZMT4 941 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 POLNQ7Z5Q5 900 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 CAMK1DQ8IU85 385 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 TP53INP2Q8IXH6 220 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 PDCD7Q8N8D1 485 aaKnown RBP21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 TEKT4Q8WW24 435 aa21.91■■□□□ 1.1
CCDC28B-201ENST00000373602 HSPH1Q92598 858 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms