RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 TBC1D3FA6NER0 549 aaPredicted RBP15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TBC1D3LB9A6J9 549 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 SPINT1O43278 529 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TBC1D3HP0C7X1 549 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 ITIH2P19823 946 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TGM2P21980 687 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 RENBPP51606 427 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 COPS2P61201 443 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 NSUN2Q08J23 767 aaKnown RBP eCLIP15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 AP1B1Q10567 949 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZBTB17Q13105 803 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TBC1D3GQ6DHY5 549 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TBC1D3CQ6IPX1 549 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 BBS12Q6ZW61 710 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TBC1D3Q8IZP1 549 aaPredicted RBP15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 UBL4BQ8N7F7 174 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 FATE1Q969F0 183 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 CEP41Q9BYV8 373 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 OSBPL8Q9BZF1 889 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 MIR1-1HGQ9H1L0 117 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 ITM2BQ9Y287 266 aa15.25■□□□□ 0.03
SMPDL3A-201ENST00000368440 TP53BP1Q12888 1972 aaPredicted RBP15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 GOLGA6L9A6NEM1 432 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 HLA-DQB2P05538 268 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 CCNB1P14635 433 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 MAT2AP31153 395 aaKnown RBP15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 PTPN7P35236 360 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 GNG11P61952 73 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 IHHQ14623 411 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 PDK1Q15118 436 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 CSRP2Q16527 193 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 WDR45BQ5MNZ6 344 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 SYCP2LQ5T4T6 812 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 FBXL19Q6PCT2 694 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 KIAA2013Q8IYS2 634 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZCCHC9Q8N567 271 aaKnown RBP15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 NUDCD1Q96RS6 583 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 SUV39H2Q9H5I1 410 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 NOD2Q9HC29 1040 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 FSCN3Q9NQT6 498 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 RBM22Q9NW64 420 aaKnown RBP eCLIP15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 FADS3Q9Y5Q0 445 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 PCDH15Q96QU1 1955 aa15.24■□□□□ 0.03
SMPDL3A-201ENST00000368440 LRRK1Q38SD2 2015 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 PPP1R12AO14974 1030 aaPredicted RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 LRP3O75074 770 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 JCHAINP01591 159 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZNF806P0C7X5 589 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 HSPA9P38646 679 aaKnown RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 NR2C2P49116 596 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 AP1S1P61966 158 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 PRKD1Q15139 912 aaPredicted RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 MEI1Q5TIA1 1274 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 BBS5Q8N3I7 341 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 C1orf216Q8TAB5 229 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 P3H4Q92791 437 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 TUBGCP5Q96RT8 1024 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 IL12RB2Q99665 862 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 FAM118BQ9BPY3 351 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 KDM4CQ9H3R0 1056 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 ATP13A3Q9H7F0 1226 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 SCUBE2Q9NQ36 999 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 VPS45Q9NRW7 570 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 RXFP3Q9NSD7 469 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 TTLL3Q9Y4R7 772 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 EP300Q09472 2414 aaPredicted RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 TSPAN11A1L157 253 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 TRAFD1O14545 582 aaPredicted RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 RNGTTO60942 597 aaKnown RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 TIMP2P16035 220 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 CCR5P51681 352 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 IFI35P80217 286 aaPredicted RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 DSC2Q02487 901 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 BCL2L1Q07817 233 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 ITKQ08881 620 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 PRR23CQ6ZRP0 262 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZC3H18Q86VM9 953 aaKnown RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 CNTD1Q8N815 330 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 KLK6Q92876 244 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 SEMA3CQ99985 751 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 PREBQ9HCU5 417 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 SEPT10Q9P0V9 454 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 DKK3Q9UBP4 350 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZFR2Q9UPR6 939 aaKnown RBP15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 PCDHGC4Q9Y5F7 938 aa15.23■□□□□ 0.03
SMPDL3A-201ENST00000368440 GON4LQ3T8J9 2241 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 DMXL1Q9Y485 3027 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 A0A1W2PQU0 124 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 APOC4-APOC2K7ER74 178 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 LATO43561 262 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 PCDH8O95206 1070 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 APOC2P02655 101 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 PRKCGP05129 697 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 CD27P26842 260 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 SERPINA4P29622 427 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 SEMG2Q02383 582 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 NIPAL4Q0D2K0 466 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 TRAF2Q12933 501 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms