RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 GAL3ST3Q96A11 431 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 LGMNQ99538 433 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 LRRC1Q9BTT6 524 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 CYP3A43Q9HB55 503 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 IL23AQ9NPF7 189 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 GIN1Q9NXP7 522 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 GHRLQ9UBU3 117 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 MARCOQ9UEW3 520 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 I3L521 148 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 NTRK1P04629 796 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 FAM58BPP0C7Q3 252 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 SLC35G4P0C7Q5 338 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 PPP2R1BP30154 601 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 RPS15P62841 145 aaKnown RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 CREB5Q02930 508 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 BIKQ13323 160 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF211Q13398 564 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 COL19A1Q14993 1142 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 TAF13Q15543 124 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 KNOP1Q1ED39 458 aaKnown RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 GARNL3Q5VVW2 1013 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 DENND5BQ6ZUT9 1274 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 C7orf57Q8NEG2 295 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 OR14C36Q8NHC7 312 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 CLHC1Q8NHS4 586 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 RASGRP4Q8TDF6 673 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 ACOX2Q99424 681 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 S100A13Q99584 98 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 ROPN1BQ9BZX4 212 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 KLHL4Q9C0H6 718 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 WNT8AQ9H1J5 351 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 TOR3AQ9H497 397 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 ROPN1Q9HAT0 212 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 RUVBL1Q9Y265 456 aaKnown RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 COLEC10Q9Y6Z7 277 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 COMMD3-BMI1R4GMX3 469 aa8.71□□□□□ -1.02
SYNE1-206ENST00000367253 PDS5AQ29RF7 1337 aaKnown RBP8.71□□□□□ -1.02
SYNE1-206ENST00000367253 PEAK1Q9H792 1746 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 FKBP6O75344 327 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ETS2P15036 469 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 IDSP22304 550 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CNTFP26441 200 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 EPHB2P29323 1055 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ITIH4Q14624 930 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PFKFB3Q16875 520 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 TMEM214Q6NUQ4 689 aaKnown RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 IZUMO2Q6UXV1 221 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 TRPM4Q8TD43 1214 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 NKD2Q969F2 451 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 AKT1S1Q96B36 256 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ELMO2Q96JJ3 720 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 KIFC1Q9BW19 673 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 TTLL2Q9BWV7 592 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 HDHD2Q9H0R4 259 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 TLR9Q9NR96 1032 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 WWOXQ9NZC7 414 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PSMC3IPQ9P2W1 217 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 AMACRQ9UHK6 382 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CDYLQ9Y232 598 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CDY1Q9Y6F8 540 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 LTN1O94822 1766 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PVALEFA0A1B0GWK0 134 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 TMEM120BA0PK00 339 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 A8MV72 311 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 GRM6O15303 877 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ENSAO43768 121 aaKnown RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SOAT2O75908 522 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 HLA-DRAP01903 254 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 MBP02144 154 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 IL6P05231 212 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 EPHX1P07099 455 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SCTRP47872 440 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SERPINB9P50453 376 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CCT8P50990 548 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SIM2Q14190 667 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 EDRF1Q3B7T1 1238 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PRPF38BQ5VTL8 546 aaKnown RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ZNF527Q8NB42 609 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 DCBLD2Q96PD2 775 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PSKH2Q96QS6 385 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 MYLK2Q9H1R3 596 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 PLGRKTQ9HBL7 147 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CD274Q9NZQ7 290 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CLUHO75153 1309 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 SSNA1O43805 119 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CATP04040 527 aaKnown RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CCDC130P13994 396 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CREB1P16220 341 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 GJA1P17302 382 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 RAB4AP20338 218 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CDH6P55285 790 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CATSPERGQ6ZRH7 1159 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 LYSMD3Q7Z3D4 306 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 ARL6IP6Q8N6S5 226 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 NLGN2Q8NFZ4 835 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 VANGL1Q8TAA9 524 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 HMGB4Q8WW32 186 aa8.7□□□□□ -1.02
SYNE1-206ENST00000367253 GTPBP3Q969Y2 492 aaKnown RBP8.7□□□□□ -1.02
SYNE1-206ENST00000367253 CIDECQ96AQ7 238 aaPredicted RBP8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms