RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 A0A087X1B8 175 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 CNTN5O94779 1100 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 SLC2A3P11169 496 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 PAX7P23759 505 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 CD86P42081 329 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 NDST2P52849 883 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 POU4F1Q01851 419 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 DSC1Q08554 894 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 ALFQ53S48 1182 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 ZNF789Q5FWF6 425 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 PPM1LQ5SGD2 360 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 ZNF683Q8IZ20 524 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 ZYG11BQ9C0D3 744 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 FBXO44Q9H4M3 255 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 ARNT2Q9HBZ2 717 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 PRDM5Q9NQX1 630 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 RGS18Q9NS28 235 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 CDYLQ9Y232 598 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 SLCO1B7G3V0H7 640 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 AIM2O14862 343 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 UPP2O95045 317 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 THRAP10827 490 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 NUDT2P50583 147 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 EFEMP1Q12805 493 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 PDCD2Q16342 344 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-202ENST00000352886 PSMD5Q16401 504 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 TMEM154Q6P9G4 183 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 SNX32Q86XE0 403 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 HIPK4Q8NE63 616 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 GPR152Q8TDT2 470 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 JADE3Q92613 823 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 MRPL57Q9BQC6 102 aaKnown RBP21.98■■□□□ 1.11
SHMT1-202ENST00000352886 DPPA5A6NC42 116 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 RHOQP17081 205 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 SERPINH1P50454 418 aaKnown RBP21.98■■□□□ 1.11
SHMT1-202ENST00000352886 DSG1Q02413 1049 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 ASPHQ12797 758 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 CSHL1Q14406 222 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 NFE2Q16621 373 aaPredicted RBP21.98■■□□□ 1.11
SHMT1-202ENST00000352886 MARC1Q5VT66 337 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 TMEM198Q66K66 360 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 NXNQ6DKJ4 435 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 KIAA0408Q6ZU52 694 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 ZNF354CQ86Y25 554 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 SPNS2Q8IVW8 549 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 TXNDC5Q8NBS9 432 aaKnown RBP21.98■■□□□ 1.11
SHMT1-202ENST00000352886 FUBP3Q96I24 572 aaKnown RBP eCLIP21.98■■□□□ 1.11
SHMT1-202ENST00000352886 SP110Q9HB58 689 aa21.98■■□□□ 1.11
SHMT1-202ENST00000352886 RGSL1A5PLK6 1076 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 TBX18O95935 607 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 PPARGP37231 505 aaPredicted RBP21.97■■□□□ 1.11
SHMT1-202ENST00000352886 MTTPP55157 894 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 DSC2Q02487 901 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 NSUN2Q08J23 767 aaKnown RBP eCLIP21.97■■□□□ 1.11
SHMT1-202ENST00000352886 SREBF2Q12772 1141 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 ADGRG6Q86SQ4 1221 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 COLGALT2Q8IYK4 626 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 TTC9BQ8N6N2 239 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 PDCD6IPQ8WUM4 868 aaKnown RBP21.97■■□□□ 1.11
SHMT1-202ENST00000352886 PSMG2Q969U7 264 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 C8orf48Q96LL4 319 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 POMKQ9H5K3 350 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 ATP13A1Q9HD20 1204 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 TMEM248Q9NWD8 314 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 NCKIPSDQ9NZQ3 722 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 VWA8A3KMH1 1905 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 CA12O43570 354 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 PRKAR2AP13861 404 aaKnown RBP21.97■■□□□ 1.11
SHMT1-202ENST00000352886 KPNA2P52292 529 aaKnown RBP21.97■■□□□ 1.11
SHMT1-202ENST00000352886 RNF111Q6ZNA4 994 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 DHDDSQ86SQ9 333 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 PNPLA1Q8N8W4 532 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 CATSPER2Q96P56 530 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 OLFM1Q99784 485 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 ECSITQ9BQ95 431 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 IGSF5Q9NSI5 407 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 CLIC5Q9NZA1 410 aa21.97■■□□□ 1.11
SHMT1-202ENST00000352886 TTC24A2A3L6 582 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 NEMP2A6NFY4 417 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 TMEM233B4DJY2 109 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 BUD23O43709 281 aaKnown RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 EOMESO95936 686 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 SLC24A5Q71RS6 500 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 RNF135Q8IUD6 432 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 ARHGAP18Q8N392 663 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 KDM1BQ8NB78 822 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 CALML6Q8TD86 181 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 ZIC5Q96T25 663 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 VPS45Q9NRW7 570 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 SQORQ9Y6N5 450 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 FAM155AB1AL88 458 aaPredicted RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 TMEM189-UBE2V1I3L0A0 370 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 NPHS1O60500 1241 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 MMP2P08253 660 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 CDC16Q13042 620 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 IHHQ14623 411 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 VARS2Q5ST30 1063 aaKnown RBP21.96■■□□□ 1.11
SHMT1-202ENST00000352886 TRIM67Q6ZTA4 783 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 MIB1Q86YT6 1006 aa21.96■■□□□ 1.11
SHMT1-202ENST00000352886 CPSF7Q8N684 471 aaKnown RBP21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms