RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 OR2T3Q8NH03 318 aa13.41□□□□□ -0.26
COL6A3-202ENST00000347401 SAMHD1Q9Y3Z3 626 aaKnown RBP13.41□□□□□ -0.26
COL6A3-202ENST00000347401 RAD17O75943 681 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 VPS26BQ4G0F5 336 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 UBE2Q1Q7Z7E8 422 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 DSG4Q86SJ6 1040 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ART4Q93070 314 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 AIFM2Q9BRQ8 373 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GPN3Q9UHW5 284 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 EPB42P16452 691 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TRIM32Q13049 653 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 C11orf74Q86VG3 221 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 RASAL3Q86YV0 1011 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 LRRC20Q8TCA0 184 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 SLC9A6Q92581 669 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CERS2Q96G23 380 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PRR12Q9ULL5 1215 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PNMA8BQ9ULN7 279 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GIT1Q9Y2X7 761 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 DIP2AQ14689 1571 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ZSCAN5CA6NGD5 496 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 NADKO95544 446 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 HUNKP57058 714 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TROAPQ12815 778 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CBX3Q13185 183 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 DDX39BQ13838 428 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 RETSATQ6NUM9 610 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 USP43Q70EL4 1123 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 KBTBD2Q8IY47 623 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PGAM4Q8N0Y7 254 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CCDC107Q8WV48 283 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 VPS35Q96QK1 796 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CRAMP1Q96RY5 1269 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PPP1R16BQ96T49 567 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ZNF304Q9HCX3 659 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TRNAU1APQ9NX07 287 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 AXLP30530 894 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 RBM34P42696 430 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GIT2Q14161 759 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CYP2R1Q6VVX0 501 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 MSANTD1Q6ZTZ1 278 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ARMC8Q8IUR7 673 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ERI1Q8IV48 349 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 REXO5Q96IC2 774 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PHF12Q96QT6 1004 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TTYH1Q9H313 450 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 POMKQ9H5K3 350 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ROBO3Q96MS0 1386 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 SIGLEC16A6NMB1 481 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 POLRMTO00411 1230 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 STAG3L1P0CL83 205 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GPR107Q5VW38 600 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GMCL1Q96IK5 515 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 KANSL3Q9P2N6 904 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 NPHP4O75161 1426 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 KIF13AQ9H1H9 1805 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TPP1O14773 563 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 KRT36O76013 467 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 OR6A2O95222 327 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PPP4CP60510 307 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CAMK1Q14012 370 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 VN1R5Q7Z5H4 357 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 ALLCQ8N6M5 410 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GMCL1P1Q8NEA9 526 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 MED8Q96G25 268 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 AP1S3Q96PC3 154 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 S100A14Q9HCY8 104 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TMEM9Q9P0T7 183 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PCDHB7Q9Y5E2 793 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TLL2Q9Y6L7 1015 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CTDNEP1O95476 244 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 NDUFB10O96000 172 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PSEN1P49768 467 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 POU6F1Q14863 301 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 C4orf19Q8IY42 314 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PHACTR4Q8IZ21 702 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 TTC29Q8NA56 475 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 FBXO32Q969P5 355 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 PTGFRNQ9P2B2 879 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 GULP1Q9UBP9 304 aa13.4□□□□□ -0.26
COL6A3-202ENST00000347401 SCAF8Q9UPN6 1271 aaKnown RBP13.4□□□□□ -0.26
COL6A3-202ENST00000347401 CAPN15O75808 1086 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 HNRNPH3P31942 346 aaKnown RBP13.39□□□□□ -0.27
COL6A3-202ENST00000347401 AGMOQ6ZNB7 445 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 THAP5Q7Z6K1 395 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 PIH1D2Q8WWB5 315 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 AGXT2Q9BYV1 514 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 ADAM33Q9BZ11 813 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF214Q9UL59 606 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-202ENST00000347401 FAM237AA0A1B0GTK4 181 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 ULK1O75385 1050 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 STOMP27105 288 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 RAB10P61026 200 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 IFI35P80217 286 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-202ENST00000347401 ZZZ3Q8IYH5 903 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 ZFAND2BQ8WV99 257 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 PHF21BQ96EK2 531 aa13.39□□□□□ -0.27
COL6A3-202ENST00000347401 CEP170BQ9Y4F5 1589 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-202ENST00000347401 CBWD3Q5JTY5 395 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms