RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PGBD5Q8N414 524 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 PABPC5Q96DU9 382 aaKnown RBP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 IGSF5Q9NSI5 407 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 TMEM248Q9NWD8 314 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 RNF186Q9NXI6 227 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 MTF2Q9Y483 593 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 A6NHS1 94 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 TMEM189-UBE2V1I3L0A0 370 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 LIN7AO14910 233 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 RHOQP17081 205 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 KCNA5P22460 613 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 CRABP2P29373 138 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 PRDX6P30041 224 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 POLD2P49005 469 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 AP2B1P63010 937 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 ITKQ08881 620 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 PRKAA1Q13131 559 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 FBXL22Q6P050 247 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 MIB1Q86YT6 1006 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 KDM1BQ8NB78 822 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 MICAL1Q8TDZ2 1067 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 FUBP3Q96I24 572 aaKnown RBP eCLIP15.59■□□□□ 0.09
UPF3B-202ENST00000345865 ZYG11BQ9C0D3 744 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 CRISPLD1Q9H336 500 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 S100A14Q9HCY8 104 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 ANGPTL2Q9UKU9 493 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 SQORQ9Y6N5 450 aa15.59■□□□□ 0.09
UPF3B-202ENST00000345865 IGLV3-10A0A075B6K4 115 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 BAG2O95816 211 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 CPB1P15086 417 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 PAMP19021 973 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 PIK3R1P27986 724 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 SERPINH1P50454 418 aaKnown RBP15.58■□□□□ 0.08
UPF3B-202ENST00000345865 RENBPP51606 427 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 NDST2P52849 883 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 ACLYP53396 1101 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 FAM189BP81408 668 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 TBL3Q12788 808 aaKnown RBP15.58■□□□□ 0.08
UPF3B-202ENST00000345865 TCHHL1Q5QJ38 904 aaPredicted RBP15.58■□□□□ 0.08
UPF3B-202ENST00000345865 RASIP1Q5U651 963 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 MARC1Q5VT66 337 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 RAP1GAP2Q684P5 730 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 LDB1Q86U70 411 aaPredicted RBP15.58■□□□□ 0.08
UPF3B-202ENST00000345865 CCNYL1Q8N7R7 359 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 PCSK9Q8NBP7 692 aaKnown RBP15.58■□□□□ 0.08
UPF3B-202ENST00000345865 SH3RF2Q8TEC5 729 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 PPP1R2P1Q96PQ5 205 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 MRPL46Q9H2W6 279 aaKnown RBP15.58■□□□□ 0.08
UPF3B-202ENST00000345865 FBXO44Q9H4M3 255 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 ZNF385DQ9H6B1 395 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 IL37Q9NZH6 218 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 PACSIN3Q9UKS6 424 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 POMPQ9Y244 141 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 SLC27A5Q9Y2P5 690 aa15.58■□□□□ 0.08
UPF3B-202ENST00000345865 MAP3K7O43318 606 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 HMBSP08397 361 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 DNAJB1P25685 340 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 ARSDP51689 593 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 PRKAA2P54646 552 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 CSHL1Q14406 222 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 NFE2Q16621 373 aaPredicted RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 FAM219BQ5XKK7 198 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 CNDP1Q96KN2 507 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 MARK4Q96L34 752 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 ZNF184Q99676 751 aaPredicted RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 RTKNQ9BST9 563 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 GPR62Q9BZJ7 368 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 PRKD2Q9BZL6 878 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 FNIP2Q9P278 1114 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 HCSTQ9UBK5 93 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 ARHGAP26Q9UNA1 814 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 LRCH1Q9Y2L9 728 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 PCDHB5Q9Y5E4 795 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 GREB1Q4ZG55 1949 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 FAM92AA1XBS5 289 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 HEATR9A2RTY3 570 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 BUD23O43709 281 aaKnown RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 POU4F1Q01851 419 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 PDCD2Q16342 344 aaPredicted RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 RSPO2Q6UXX9 243 aaPredicted RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 RPS27LQ71UM5 84 aaKnown RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 SNX32Q86XE0 403 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 LMNTD2Q8IXW0 634 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 PPFIBP2Q8ND30 876 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 ARRDC2Q8TBH0 407 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 MRPL57Q9BQC6 102 aaKnown RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 SUDS3Q9H7L9 328 aaPredicted RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 TNFRSF12AQ9NP84 129 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 NDE1Q9NXR1 346 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.57■□□□□ 0.08
UPF3B-202ENST00000345865 KCTD3Q9Y597 815 aa15.57■□□□□ 0.08
UPF3B-202ENST00000345865 TADA2AO75478 443 aa15.56■□□□□ 0.08
UPF3B-202ENST00000345865 VNN2O95498 520 aa15.56■□□□□ 0.08
UPF3B-202ENST00000345865 SLC2A3P11169 496 aa15.56■□□□□ 0.08
UPF3B-202ENST00000345865 HNRNPLP14866 589 aaKnown RBP eCLIP15.56■□□□□ 0.084e-7■■■■□ 24
UPF3B-202ENST00000345865 ETFBP38117 255 aa15.56■□□□□ 0.08
UPF3B-202ENST00000345865 LEPRP48357 1165 aaKnown RBP15.56■□□□□ 0.08
UPF3B-202ENST00000345865 MTTPP55157 894 aa15.56■□□□□ 0.08
UPF3B-202ENST00000345865 ARPP19P56211 112 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms